Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2 190 1e-42 seq16 107 1e-17 seq2910 104 2e-16 seq17 100 2e-15 >seq2 Length=37257225 Score = 190 bits (210), Expect = 1e-42 Identities = 379/554 (68%), Gaps = 8/554 (1%) Strand=Plus/Plus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 ||||||| |||| ||||| | || || || ||| ||||| | || | || ||| Sbjct 5826041 GAATTGCTGTTGGGATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTTCAGCATG 5826100 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | || || || || ||||| |||||||| || || || |||||||| || || | | Sbjct 5826101 GAAACGTGGAGATCATTGCTAATGACCAGGGAAACAGGACAACACCCAGCTACGTGGCCT 5826160 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 | || || ||||| || |||||||||||||| ||| | |||| || | || || Sbjct 5826161 TCACGGACACTGAGAGGCTCATTGGAGATGCTGCAAAAAACCAAGTGGCCTTGAACCCCA 5826220 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT-GTC 474562 || || | |||||||| || || ||||||| | || ||||| ||| ||| | || Sbjct 5826221 ACAACACAGTGTTTGATGCCAAGAGGCTGATTGGCAGGAAGTTTGACGAT-CCAGTCGTA 5826279 Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA 474622 || ||||| ||| ||||||||||| | |||| | | ||| || || || | | Sbjct 5826280 CAGTCTGACATGAAGCATTGGCCTTTCCAAGTGACCAGCGATGGAGGCAAGCCGAAGGTT 5826339 Query 474623 GAAGC--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGG 474680 ||| | |||| ||| || | ||| |||| || || | || || || |||| Sbjct 5826340 CAAGTCGAGTACAA--AGGGGAGAAGAAATCCTTTTACCCTGAGGAGATCTCCTCCATGG 5826397 Query 474681 TTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 || | | |||||||| ||| ||| ||| | ||||||||||| ||||||| | || Sbjct 5826398 TTCTGGTGAAAATGAAGGAAATCGCAGAGGCC-TATCTTGGACAGAAAGTAACAAACGCT 5826456 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || ||||||||||| || || || ||||| ||||| | ||||| ||||||||||| ||| Sbjct 5826457 GTTATTACTGTTCCTGCCTACTTCAATGACTCTCAGAGACAAGCCACTAAAGATGCTGGA 5826516 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 ||||| || || || || | | || || || || || ||||| || || || || Sbjct 5826517 GTGATTGCTGGACTGAACGTCCTGAGGATCATCAACGAGCCCACAGCTGCAGCGCTCGCC 5826576 Query 474860 TATGGTCTTGATAA 474873 || || || || || Sbjct 5826577 TACGGCCTGGACAA 5826590 Score = 96.9 bits (106), Expect = 2e-14 Identities = 173/248 (70%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCT-GCTACTCAAACTACTGTTGAAGT 475554 || || ||||| | || ||| || | || || || ||| ||||| | | ||||| | Sbjct 5826823 ACAGCCTGTGAGAGAGCCAAGAGAACCCTGTCCTCCAGCT-CTCAAGCCAGCATTGAAAT 5826881 Query 475555 TGATTCTCTTTTTGAAGGAATTGATTATAATACTCTT--ATTACAAGGGCTAAATTTGAA 475612 || || || | |||||| | ||| | | ||||||| || || || || |||||| Sbjct 5826882 CGACTCCCTGTATGAAGGCACTGACTTT--TACTCTTCCATCACCAGAGCACGCTTTGAA 5826939 Query 475613 GATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGAT 475672 || | ||||| ||||| || ||| ||| | || || || || | | || |||||| Sbjct 5826940 GAGTTGTGTTCGGATCTGTTCAGAGGAACGCTAGAGCCGGTGGAGAAGGCCCTGAGAGAT 5826999 Query 475673 TCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATT 475732 | || | |||||||| || ||||||||||||| || || |||||||| |||||||| Sbjct 5827000 GCCAAGATGGACAAATCTCAGATCCATGAAATTGTCCTGGTTGGAGGTTCTACAAGAATC 5827059 Query 475733 CCAAAAAT 475740 || || || Sbjct 5827060 CCCAAGAT 5827067 >seq16 Length=25964114 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || || || ||||| || || || || ||||| |||||||| || ||||||| Sbjct 11744989 ATGCTGTGATAACAGTACCAGCTTACTTCAACGACTCTCAGCGTCAAGCCACAAAAGATG 11744930 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| || | ||||| |||||| |||| ||||||||||| || || || || || Sbjct 11744929 CTGGAACTATCTCTGGTCTAAATGTTCTACGAATTATTAATGAGCCTACTGCTGCTGCTA 11744870 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||| || || ||||| Sbjct 11744869 TTGCCTATGGGCTGGACAAGAA 11744848 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || || || || || || || || || ||||| |||||||| || ||||||| Sbjct 11762367 ATGCTGTGATAACAGTACCGGCTTACTTCAACGACTCTCAGCGTCAAGCCACAAAAGATG 11762426 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| || | ||||| ||||| | || ||||||||||| || || || || || Sbjct 11762427 CTGGAACGATCTCTGGTCTGAATGTACTGCGAATTATTAATGAGCCTACTGCTGCTGCTA 11762486 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||| | || ||||| Sbjct 11762487 TTGCCTATGGGTTGGACAAGAA 11762508 Score = 86.0 bits (94), Expect = 4e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 ||| |||| |||| |||||| |||| || |||||| ||||| | | | || ||| Sbjct 11745648 GAACTGCAGTTGGCATTGATCTAGGGACCACTTACTCCTGTGTGGGAATCTTCCAGCATG 11745589 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| ||||| ||||| ||||||||||| || || || |||||| ||||| | | Sbjct 11745588 GCAAAGTGGAAATCATTGCTAATGACCAAGGAAACAGGACCACACCAAGCTATGTGGCCT 11745529 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 | || || |||||| | ||||| || || || || | |||| Sbjct 11745528 TCACGGATACTGAAAGGTTGATTGGTGACGCAGCCAAGAACCAAG 11745484 >seq2910 Length=1297 Score = 104 bits (114), Expect = 2e-16 Identities = 181/261 (69%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 ||||||| |||| ||||| | || || || ||| ||||| | || | || ||| Sbjct 1038 GAATTGCTGTTGGGATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTTCAGCATG 1097 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| || || ||||| |||||||| || || || |||||||| || || | | Sbjct 1098 GAAAAGTGGAGATCATTGCTAATGACCAGGGAAACAGGACAACACCCAGCTACGTGGCCT 1157 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 | || || ||||| || |||||||||||||| ||| | |||| || | || || Sbjct 1158 TCACGGACACTGAGAGGCTCATTGGAGATGCTGCAAAAAACCAAGTGGCCTTGAACCCCA 1217 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT-GTC 474562 || || | |||||||| || || ||||||| | || ||||| ||| ||| | || Sbjct 1218 ACAACACAGTGTTTGATGCCAAGAGGCTGATTGGCAGGAAGTTTGACGAT-CCAGTCGTA 1276 Query 474563 CAATCTGATATGCGTCATTGG 474583 || ||||| ||| |||||| Sbjct 1277 CAGTCTGACATGAAGCATTGG 1297 >seq17 Length=25916894 Score = 100 bits (110), Expect = 2e-15 Identities = 230/339 (68%), Gaps = 8/339 (2%) Strand=Plus/Minus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | ||||||||||| || || ||||| | || |||||| |||||| | | Sbjct 20567836 CGTCTGCGTACTGCTTGTGAGCGAGCCAAGCGCACCCTGTCTTCTAGTACTCAGGCCAGC 20567777 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCTAA 475605 | || | || ||||||| || || || || || || ||| || || |||||| Sbjct 20567776 ATCGAGATCGACTCTCTTTACGAGGGCATCGACTTCTACACCTCC-ATCACCAGGGCTCG 20567718 Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT 475665 |||||||| | | |||| || || | || | || || || || ||| ||| Sbjct 20567717 CTTTGAAGAACTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTGGAGAAAGCTCT 20567658 Query 475666 CAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 | ||| |||| || |||||| | ||||||||||| || || || || |||||||| || Sbjct 20567657 TCGTGATGCTAAGCTGGACAAAGCCCAAGTCCATGACATCGTCCTGGTCGGAGGTTCTAC 20567598 Query 475726 AAGAATTCCAAAAATAAGAGAAATGCT--TTCATCA-TATTTTAATGGTAAAAAGTTAAA 475782 |||| ||||| || |||| ||| | || | | || ||||| ||| | | || Sbjct 20567597 CCGAATCCCAAAGAT-TCAGAA--GCTTCTACAGGACTTCTTCAATGGAAAAGAACTCAA 20567541 Query 475783 TGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 | || | ||||||||||| || ||||||||||| || Sbjct 20567540 CAAGAGCATCAATCCTGATGAGGCCGTTGCATATGGTGC 20567502 Score = 98.7 bits (108), Expect = 6e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||| ||||| | || || || ||| ||||| | ||| | || |||| ||| Sbjct 20569094 GCAGTTGGAATTGACCTTGGCACCACATACTCGTGTGTGGGTGTCTTTCAGCATGGCAAA 20569035 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||||||| || |||||| | || ||||| |||||| |||| ||| Sbjct 20569034 GTCGAAATCATTGCCAATGATCAGGGTAATCGGACCACACCCAGTTATGTTGCTTTCACT 20568975 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 || || || || || ||||||||||| ||| |||| | ||| Sbjct 20568974 GACACGGAGAGACTGATCGGAGATGCTGCCAAAAATCAGGTTGC 20568931 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||| ||| || | || || || || |||| || |||| ||| | || || Sbjct 12486099 TGAAGGAGAACGAGCCATGACAAAGGACAACAACATTCTAGGAAAATTTGAGCTGACCGG 12486158 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 ||||| ||||| ||| |||| || || || |||||||| || |||||||||||||| || Sbjct 12486159 CATTCCCCCTGCCCCCCGAGGTGTGCCACAGATTGAAGTGACCTTTGATATTGATGCCAA 12486218 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||||||||| || || |||| Sbjct 12486219 TGGTATTCTCAACGTGTCTGC 12486239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267778519187468