Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq2501 127 2e-24 seq14 87.8 2e-12 seq8869 84.2 3e-11 >seq2501 Length=1373 Score = 127 bits (140), Expect = 2e-24 Identities = 184/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 160701 AGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTC 160760 |||||| |||||| || || || || || || || ||| || || || || || || Sbjct 272 AGGTCCTCCATGCAGTTGATGTCAGCTTGAACTCGTGACCAAGAGGCATAGACAACACTC 331 Query 160761 TCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGA 160820 |||| |||||||||||||| || || ||||| ||||| || | || ||| | Sbjct 332 TCTAACTTACTGGCCACAAACACATTGGGAAAACAAGACACAATAGCTTGTACAGCCTCA 391 Query 160821 AAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAG 160880 | || |||||| | ||| ||||||| || || || || | |||||||| | ||| Sbjct 392 GAAAAGATCTTAGGTGACTTCTGGTCCACATGAACACAGTAAACATTCTGAGGAGTGTAA 451 Query 160881 ATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCT 160940 || || | || | |||||| |||||||| ||||| | |||||| || |||||||| || Sbjct 452 ATAGCACGCAGGAGCCTCTCAAACATCTCAATCTTCTCATGGATAACCATAGAGTAAGCG 511 Query 160941 ATCGGAAACTCGGTCTCCTC 160960 || ||||| || | ||||| Sbjct 512 ATTGGAAAGTCTCTTTCCTC 531 >seq14 Length=26699778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 160192 TGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAA 160251 |||| || || || | ||||| ||| | || ||||| | || |||||| || | Sbjct 12447883 TGCATGGTGGATATGGTGCTCCATTCTTTATGTTTCCTTCATGATAACTCCACTTGACCA 12447942 Query 160252 ACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGG 160311 |||| ||||| ||| ||||||| || || |||| | | |||| || || | Sbjct 12447943 ACCTCGCTATGGCCAGCATGTCCGACTCATCAAATTTTTCATTGGGGGGGGTGGAGCCAG 12448002 Query 160312 GAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCT 160371 | || ||||| | ||||| || ||||||| ||| ||||| |||||||||||||||| Sbjct 12448003 GCACCGAAGGCATCCTATGTAGTGTTGCCCACATGTGCTCGTCTGGGCTGTACGTGTCCT 12448062 Query 160372 TAGACCATTCCATGAA 160387 | |||||||||||| Sbjct 12448063 TCTCCCATTCCATGAA 12448078 >seq8869 Length=520 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 160192 TGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAA 160251 |||| || || || | ||||| ||| | || ||||| | || |||||| | | Sbjct 72 TGCATGGTGGATATGGTGCTCCATTCTTTATGTTTCCTTCATGATAACTCCACTTGCCCA 131 Query 160252 ACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGG 160311 |||| ||||| ||| ||||||| || || |||| | | |||| || || | Sbjct 132 ACCTCGCTATGGCCAGCATGTCCGACTCATCAAATTTTTCATTGGGGGGGTTGGAGCCAG 191 Query 160312 GAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCT 160371 | || ||||| | ||||| || ||||||| ||| ||||| |||||||||||||||| Sbjct 192 GCACCGAAGGCATCCTATGTAGTGTTGCCCACATGTGCTCGTCTGGGCTGTACGTGTCCT 251 Query 160372 TAGACCATTCCATGAA 160387 | |||||||||||| Sbjct 252 TCTCCCATTCCATGAA 267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577151802443160