Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq25 125 6e-24 seq3 107 2e-18 >seq25 Length=19457651 Score = 125 bits (138), Expect = 6e-24 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 |||||||| || |||||||| || ||||||| |||||||||||| ||||| ||||| ||| Sbjct 11537670 TCAGTCTCAGGATTGTCACACTCTGGACACAGCACAAACTTGCGAATGAATCCATCCAGC 11537611 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 | ||| || | || | ||||| || |||||||| ||| | || ||||| || | Sbjct 11537610 ATGTCTTGCAGTTTGTTTGCCTCGTGAGACCCGTTGACAATGTAACGGTCGTTCTTTGCA 11537551 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || | ||| ||||| || |||| |||||| |||||| |||| || || Sbjct 11537550 TCAAACTGGGTTTGGGCTCCCAACTCGCAGCCGAAGAACTTAGTTGG 11537504 >seq3 Length=35853109 Score = 107 bits (118), Expect = 2e-18 Identities = 126/168 (75%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 |||||||| || || ||||| || || |||| |||||||||||| ||||| ||||| ||| Sbjct 19775330 TCAGTCTCAGGATTATCACACTCAGGGCACAGCACAAACTTGCGTATGAATCCATCCAGC 19775271 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT-TTTGTA 34436 | |||||| | || || || ||||||||||| || ||| | || || || ||||| Sbjct 19775270 ATGTCCTGCAGTTTGTTGGCCTCATGGGAGCCGTTCACTATGTAGCGGTCATTCTTTGT- 19775212 Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || | ||| || || || || ||||| || ||||| |||| || || Sbjct 19775211 GTCAAACTGGGTCTGTGCCCCAAGCTCACAGCCGAAAAACTTGGTTGG 19775164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412794600693113