Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2 201 8e-46 seq16 113 3e-19 seq17 89.7 4e-12 >seq2 Length=37257225 Score = 201 bits (222), Expect = 8e-46 Identities = 960/1514 (63%), Gaps = 20/1514 (1%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 |||||| || || || || || |||| || ||| || | |||| ||| || || Sbjct 5827545 ATTAGTGATGGTGATCTTGTTCTCTTTGCCAGTGCTTTTGTCCACAGCAGACACGTTCAG 5827486 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 ||| || ||||| || | ||||| || ||||| || ||||| || || | | || || Sbjct 5827485 AATGCCGTTGGCGTCAATGTCAAAGGTCACTTCGATCTGAGGAACTCCACGTGGTGCGGG 5827426 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 |||||| || || || ||| | || || || || ||||| || | || || Sbjct 5827425 TGGGATGCCCGTCAGATCAAACTTCCCGAGCAGGTTGTTGTCTTTGGTCATGGCTCTCTC 5827366 Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619 ||| || | | ||||| ||| ||| || || |||| || || | || | | Sbjct 5827365 ACCTTCATACACCTGGATCAGAACCCCAGGCTGGTTGTCTGCGTACGTGCTGAAGATTTG 5827306 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 | | || || || || ||||| | | || | | ||||||| | || || || Sbjct 5827305 TGTCTGCTTGGTGGGGATGGTGGTGTTGCGTTTGATGAGAGTGGTCATGACTCCTCCTGC 5827246 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 281739 || || | || || || || |||| ||||| | || | | | || | ||| | Sbjct 5827245 GGTCTCAATGCCCAGGGACAGTGGAGCCACATCCAGCAGCAGCAAGTCCTGGACGTTTCC 5827186 Query 281740 ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 281799 | || | || | || || || || |||| || ||||| || || || || || || Sbjct 5827185 AGAGGTGTCGCCCATGAGGATGGCGGCCTGAACTGCGGCACCGTAAGCTACCGCCTCGTC 5827126 Query 281800 AGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-A 281858 || || | ||| || |||| ||||| || | | ||||||| ||| | Sbjct 5827125 TGGGTTGATGCTTTTGTTCAGTTCCCGTCCATTAAAGGAGTCCTGCAGAAGTT-TCTGGA 5827067 Query 281859 CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCA 281918 ||| || || | | || |||||||| | ||||||||||| | ||| ||||| |||| Sbjct 5827066 TCTTGGGGATTCTTGTAGAACCTCCAACCAGGACAATTTCATGGATCTGAGATTTGTCCA 5827007 Query 281919 GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAAC 281978 || | ||| | | || || || || || || |||| |||| || |||| Sbjct 5827006 TCTTGGCATCTCTCAGGGCCTTCTCCACCGGCTCTAGCGTTCCTCTGAACAGATCCGAAC 5826947 Query 281979 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAA 282037 | | ||||| || ||||| || | | | | || || ||| | ||||| ||| Sbjct 5826946 ACAACTCTTCAAAGCGTGCTCTGGTGATGGA-AGAGTAAAAGTCAGTGCCTTCATACAGG 5826888 Query 282038 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 282097 || || | |||||| | | ||||| || || || | | || || | ||||| Sbjct 5826887 GAGTCGATTTCAATGCTGGCTTGAGAGCTGGAGGACAGGGTTCTCTTGGCTCTCTCACAG 5826828 Query 282098 GCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTGATTGATTCAAATCTGTTTTATATTT 282153 ||||| | || || | | |||| | | ||| |||| || | || | || Sbjct 5826827 GCTGTACGCAGCCTCCTCAGGGCTCTCTTGTTCTGGCTGATG----TCCTTCTTGTGCTT 5826772 Query 282154 TCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 282213 ||||||||| || || ||| | | || || || || ||||| || || || |||| Sbjct 5826771 TCTCTTGAATTCCTCCACAAAGTGGTTGACCAGGCGGTTGTCAAAGTCCTCTCCGCCCAG 5826712 Query 282214 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 282273 | ||| | ||| | || ||| | |||| || | |||||||| | | || | | Sbjct 5826711 GTGAGTGTCTCCGGCTGTGGCTTTCACTTCAAAGATGCCATCTTCGATGGTCAGGATGGA 5826652 Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT-TGTCTTGGT 282332 ||||| ||| ||||| |||| ||||| || || | ||| ||| | ||||| Sbjct 5826651 CACATCGAAGGTACCACCTCCCAGGTCAAAGATCAGGATATTGCGCTCTCCTTTCTTGCC 5826592 Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 ||| || || || || || | || ||||| || || || || || || |||| || | Sbjct 5826591 TTTG-TCCAGGCCGTAGGCGAGCGCTGCAGCTGTGGGCTCGTTGATGATCCTCAGGACGT 5826533 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | || |||||||| ||| |||||||||||||||||||| || || || || || || | Sbjct 5826532 TCAGTCCAGCAATCACTCCAGCATCTTTAGTGGCTTGTCTCTGAGAGTCATTGAAGTAGG 5826473 Query 282453 CAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTT 282512 |||||||||||||||| || | |||||||| | ||||| ||| || ||| ||| | Sbjct 5826472 CAGGAACAGTAATAACAGCGTTTGTTACTTTCTGTCCAAGATAGGCCTCTGCGATTTCCT 5826413 Query 282513 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG---AGAATATTGCTTGGATTCAT 282569 ||||||| | || ||| || || || | || || | | ||| ||| | | Sbjct 5826412 TCATTTTCACCAGAACCATGGAGGAGATCTCCTCAGGGTAAAAGGATTTCTT--CTCCCC 5826355 Query 282570 TTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAAT 282629 |||| || |||| || | || || ||| | | | |||| || ||||||| Sbjct 5826354 TTTG-TACTCGACTTGAACCTTCGGCTTGCCTCCATCGCTGGTCACTTGGAAAGGCCAAT 5826296 Query 282630 ATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCAT 282689 ||||| || || || || | | || | ||| | || ||||| | | || |||| Sbjct 5826295 GCTTCATGTCAGACTGTACGACTGGATCGTCAAACTTCCTGCCAATCAGCCTCTTGGCAT 5826236 Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || ||| | || || | || |||| | ||| || ||||||||||| || Sbjct 5826235 CAAACACTGTGTTGTTGGGGTTCAAGGCCACTTGGTTTTTTGCAGCATCTCCAATGAGCC 5826176 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 || || || || || | || || || ||||| | || || || ||||| |||| Sbjct 5826175 TCTCAGTGTCCGTGAAGGCCACGTAGCTGGGTGTTGTCCTGTTTCCCTGGTCATTAGCAA 5826116 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | || || || || |||| || | || || ||||| | || || || | |||| Sbjct 5826115 TGATCTCCACGTTTCCATGCTGAAACACCCCCACACAGGAGTAGGTGGTGCCCAGGTCAA 5826056 Query 282870 TACCAATAGCAATT 282883 | |||| ||||||| Sbjct 5826055 TCCCAACAGCAATT 5826042 >seq16 Length=25964114 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || || ||||| |||| |||||||||||| || ||||||||||||| | |||| Sbjct 11744848 TTCTTGTCCAGCCCATAGGCAATAGCAGCAGCAGTAGGCTCATTAATAATTCGTAGAACA 11744907 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||| || |||| |||||||| |||||||| | || || ||||| || || Sbjct 11744908 TTTAGACCAGAGATAGTTCCAGCATCTTTTGTGGCTTGACGCTGAGAGTCGTTGAAGTAA 11744967 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || || || |||| Sbjct 11744968 GCTGGTACTGTTATCACAGCAT 11744989 Score = 109 bits (120), Expect = 4e-18 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| |||||||||||| || ||||||||||||| || ||||| ||||||| Sbjct 11762496 CCATAGGCAATAGCAGCAGCAGTAGGCTCATTAATAATTCGCAGTACATTCAGACCAGAG 11762437 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || |||| |||||||| |||||||| | || || ||||| || || || || || || Sbjct 11762436 ATCGTTCCAGCATCTTTTGTGGCTTGACGCTGAGAGTCGTTGAAGTAAGCCGGTACTGTT 11762377 Query 282464 ATAACGGCAT 282473 || || |||| Sbjct 11762376 ATCACAGCAT 11762367 Score = 86.0 bits (94), Expect = 5e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| || || ||||| || || | || |||| | ||||||||||| ||||||| Sbjct 11761920 CAAAGATTGTGTTGGTGGGGTTCATGGCCACTTGGTTCTTGGCTGCATCACCAATCAACC 11761861 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||| | || || || | ||||| ||| || || || || ||||| ||||| |||| Sbjct 11761860 TTTCAGAATCAGTGAAGGCCACATAGCTTGGTGTGGTCCGGTTTCCTTGGTCATTGGCAA 11761801 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||||||||| |||| || | || || ||||| | || || || | ||||| Sbjct 11761800 TGATTTCAACTTTGCCATGCTGGAAGACTCCAACACATGAGTAGGTGGTCCCCAGATCAA 11761741 Query 282870 TACCAATAGC 282879 | |||| ||| Sbjct 11761740 TGCCAACAGC 11761731 >seq17 Length=25916894 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || || ||||| || | || || ||||||||||| || || || | | || Sbjct 20568160 TTCTTGTCCAGGCCATAAGCGATGGCGGCTGCAGTTGGTTCGTTGATGATCCGAAGGACG 20568219 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| ||| | ||||||||||| || ||||||| ||| || || || ||||| Sbjct 20568220 TTTAGTCCAGAAATGGTCCCTGCATCTTTTGTAGCTTGTCGTTGAGAGTCATTGAAATAG 20568279 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 ||||| || |||| ||| |||| Sbjct 20568280 GCAGGTACTGTAACAACTGCAT 20568301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740171796375066