Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq9 122 8e-23 >seq9 Length=30212908 Score = 122 bits (134), Expect = 8e-23 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184 || |||||||| |||| |||||||||| | || ||||||| ||| ||| ||||| Sbjct 20969590 AGTATTTGGGGTCCTACCTGCGATGGCCTGGACCGCATTGTGGAGCTGTGCACCCTGCCT 20969531 Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244 || | || ||||| |||||||| |||||||||||||||| ||||||| ||| | Sbjct 20969530 GACCGGCAGGTGGGTGACTGGCTGCTATTTGAAAACATGGGTGCTTACACTGTGGCTGCC 20969471 Query 21245 TCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTC 21294 || || |||||||||||||||| ||| ||||| | | ||||| || || Sbjct 20969470 TCGTCCACCTTTAACGGCTTCCAAAAACCAGACATCTATTATGTCATGTC 20969421 Score = 102 bits (112), Expect = 8e-17 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 21129 TTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGC 21188 ||||||| | || ||| ||||| | || ||||||| ||| |||| ||||| || | Sbjct 20989258 TTTGGGGTCATACCTGTAATGGCGTGGACCGCATTGTGGAGCTGTGTACCCTGCCTGACC 20989199 Query 21189 TTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGCTCTT 21248 || ||||| |||||||| | || ||||||||||| ||||||| ||| ||| | Sbjct 20989198 GGCAGGTGGGAGACTGGCTGCTGTTCGAAAACATGGGTGCTTACACTGTGGCTGTCTCGT 20989139 Query 21249 CAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTC 21294 | |||||||||||||||| ||| ||||| | || || || || || Sbjct 20989138 CCACCTTTAACGGCTTCCAAAAACCAGATATCCATTACGTCATGTC 20989093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463491475256880