Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq28 134 3e-26 seq15 93.3 8e-14 seq20 86.0 1e-11 seq1 86.0 1e-11 >seq28 Length=18419168 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| |||||| || | ||| || || || || ||||| ||||| || || | Sbjct 12497376 TACCGCCCCTCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGG 12497435 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || || ||||||||||| || || || || ||||| | Sbjct 12497436 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGG 12497495 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || || || || || || || || || ||||| || ||| | || || | Sbjct 12497496 GAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAA 12497555 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| |||| || || ||||| |||||||| Sbjct 12497556 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497604 Score = 116 bits (128), Expect = 7e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| || || || || ||||| ||||| || || || || | | || Sbjct 12497085 CGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCA 12497144 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||||||||| || || || || ||||| || || ||||| || Sbjct 12497145 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTG 12497204 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || || || || || || ||||| || ||| | || || || || | || || Sbjct 12497205 TCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGTGTGATG 12497264 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 |||||||| |||| || || ||||| ||||| Sbjct 12497265 GTCTTGCCAGTCAGGGTTTTCACAAAGATCTG 12497296 >seq15 Length=26085978 Score = 93.3 bits (102), Expect = 8e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||| ||| | ||||||||||| || ||||||||| | || | ||||| || || Sbjct 7913846 GATAGCATCAGCTCTGTGGTGGTACTACATCTCTAAAGGTGTGGAGTTTTTAGACACAGT 7913787 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 ||| ||||| | ||||| |||||||| ||| | || || | ||||| || || || | Sbjct 7913786 GTTCTTCATCATGAGGAAGAAGTTTAACCAGATCAGCTTCCTGCACGTCTACCACCACTG 7913727 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 || ||||| | | | | ||| | ||| | |||||| | ||||||| || Sbjct 7913726 CACCATGTTCATTCTCTGGTGGATTGGCGTCAAATGGGTCCCCGGAGGCCA 7913676 >seq20 Length=22470590 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 |||||||| ||||||||||| |||| ||||| ||||| || ||| | || || || || Sbjct 17893636 CCTTCCTTGTCTTGAATCTTGACTTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCG 17893577 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || || ||||| |||||||| || || || ||||||||| Sbjct 17893576 AGGGTGATGGTTTTGCCGGTCAACGTTTTCACGAAGATCTGCATT 17893532 >seq1 Length=37510255 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| | | || || || | ||||| | || || ||||||||||| ||| | Sbjct 23796854 TGGTGGTACTTTGTGTCAAAGGGGGTTGAATATCTGGACACAGTGTTTTTCATCCTTCGT 23796913 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || ||||| || || || | ||||| ||||| ||||| || | || ||||| ||| | Sbjct 23796914 AAGAAGTTCAACCATGTCACCTTTTTGCACGTTTATCACCACTGCACCATGTTCACTCTG 23796973 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||| | ||||| || ||| |||| || || || Sbjct 23796974 TGGTGGATTGGCATCAAGTGGGTTGCAGGTGGACA 23797008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981709693386599