Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1 102 1e-16 seq15 89.7 9e-13 >seq1 Length=37510255 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444 |||||||||| | | || || ||| | ||||| | || |||||||||||||| ||| | Sbjct 23796854 TGGTGGTACTTTGTGTCAAAGGGGGTTGAATATCTGGACACAGTGTTTTTCATCCTTCGT 23796913 Query 58445 AAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTTACTTTA 58504 || ||||| || ||||| | |||| | ||||| ||||| || | || ||||| ||| | Sbjct 23796914 AAGAAGTTCAACCATGTCACCTTTTTGCACGTTTATCACCACTGCACCATGTTCACTCTG 23796973 Query 58505 GGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAG 58540 | ||| | || || || ||| ||||||| || ||| Sbjct 23796974 TGGTGGATTGGCATCAAGTGGGTTGCAGGTGGACAG 23797009 >seq15 Length=26085978 Score = 89.7 bits (98), Expect = 9e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| ||| | ||||||||||| || |||||||| | || | ||||| ||||| Sbjct 7913846 GATAGCATCAGCTCTGTGGTGGTACTACATCTCTAAAGGTGTGGAGTTTTTAGACACAGT 7913787 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 ||| ||||| | ||||| |||||||| || | ||||| || ||||| || || || | Sbjct 7913786 GTTCTTCATCATGAGGAAGAAGTTTAACCAGATCAGCTTCCTGCACGTCTACCACCACTG 7913727 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAG 58540 || ||||| | | | | ||| | || | |||||| | | ||||| ||| Sbjct 7913726 CACCATGTTCATTCTCTGGTGGATTGGCGTCAAATGGGTCCCCGGAGGCCAG 7913675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903305715449760