Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq28 136 4e-27 seq18 104 2e-17 seq20 89.7 5e-13 >seq28 Length=18419168 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| |||||||| ||| || ||| | | | || || |||||||||| Sbjct 12497407 GGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 12497465 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || || |||||||| ||||| ||| || || Sbjct 12497466 CAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATTTTGGCCT 12497525 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| | Sbjct 12497526 TGACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGG 12497585 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 12497586 TTTTCACAAAGATCTGCAT 12497604 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| |||||||| ||| || ||| | | | || || |||||||||| Sbjct 12497635 GGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 12497693 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || || |||||||| ||||| ||| || || Sbjct 12497694 CGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATTTTAGCCT 12497753 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| | Sbjct 12497754 TGACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGG 12497813 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 12497814 TTTTCACAAAGATCTGCAT 12497832 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| |||||||| ||| || ||| | | | || || |||||||||| Sbjct 12497863 GGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 12497921 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || || |||||||| ||||| ||| || || Sbjct 12497922 CGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATTTTAGCCT 12497981 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| | Sbjct 12497982 TGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGG 12498041 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 12498042 TTTTCACAAAGATCTGCAT 12498060 Score = 125 bits (138), Expect = 7e-24 Identities = 147/196 (75%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| |||||||| ||| || ||| | | | || || |||||||||| Sbjct 12497102 GGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 12497160 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || || |||||||| ||||| ||| || || Sbjct 12497161 CAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATTTTGGCCT 12497220 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || || | |||| ||| ||||| ||||| | Sbjct 12497221 TGACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGGG 12497280 Query 133642 TTTTTACGAAAATCTG 133657 |||| || || ||||| Sbjct 12497281 TTTTCACAAAGATCTG 12497296 >seq18 Length=24512808 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||||||| | | ||||||| || ||||| | |||||| |||||||||||||| || Sbjct 14427930 CTCATCCTTGCTGGTGTACTCCACAATCTCTGTGCACAGGTTGCTGCATTTGATGGTACC 14427989 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 || ||||| || |||||||||| ||||| ||||||||||| | ||||||||| ||| Sbjct 14427990 CAGGTTCTGCTGGTTGCTCTTGCGATTGCAGGCGTCCTTGTATAACATGTACGGAGTGCC 14428049 Query 148970 AGTTTCC 148976 || ||| Sbjct 14428050 GGTCTCC 14428056 >seq20 Length=22470590 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 133557 CCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCG 133616 ||||||||||| ||||| |||| | ||||| ||||| |||||||||| ||| Sbjct 17893636 CCTTCCTTGTCTTGAATCTTGACTTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCG 17893577 Query 133617 ACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct 17893576 AGGGTGATGGTTTTGCCGGTCAACGTTTTCACGAAGATCTGCAT 17893533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483364354578840