Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq9 123 3e-23 >seq9 Length=30212908 Score = 123 bits (136), Expect = 3e-23 Identities = 239/350 (68%), Gaps = 12/350 (3%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | || || | | |||||| |||||| |||||||| || ||| ||| || Sbjct 1247747 GCCAGCTCTTTGGGAGAGGAGAAGTCGTCCACGTGGATGAAAGCATCGCCCTCTACGAAA 1247688 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || | |||||||| |||| || || | |||| || |||| ||||| |||| Sbjct 1247687 TTCTGATAATTCTCCCTCGGTGGGCCTAAAACTACTGGCACCG----TGCCAACTGAGAG 1247632 Query 177066 CGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATA 177121 ||| || ||||| || || || |||||| |||| | |||||||||||||| | || Sbjct 1247631 CGGGTTGTACAGTTTCTCCGTGATGTAGTCCTTGTGAATCGAGTTCTCAAACGCCAAGTA 1247572 Query 177122 GAATTTACAG--GAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACT 177179 |||||| ||| | ||| ||| |||| | |||| | || | ||| || || || | Sbjct 1247571 GAATTTGCAGCTGGCGATGGTA--GGGAAGTAGTCCTGGTCCGATATGTACTCGCCAAAC 1247514 Query 177180 ACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTC 177239 | | ||||| | || || || | ||| || || || |||||| || || | Sbjct 1247513 GCTTGGCCGTAGGCGTGGATCTCCACGTGCTTGTACAGTTCATTGTAGTACTTCACTCGC 1247454 Query 177240 ACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTT 177289 || || || |||||| ||||| |||| |||||| | | |||| |||| Sbjct 1247453 ACATGATCCGGGTTCCAGTTGCTCACGATCCAGCAGATCAGCTTGTTCTT 1247404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578364460833600