Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq18 98.7 9e-16 seq28 86.0 6e-12 >seq18 Length=24512808 Score = 98.7 bits (108), Expect = 9e-16 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||| || || | |||||||||||||||||| ||| |||| || ||||| | Sbjct 14427944 TGTACTCCACAATCTCTGTGCACAGGTTGCTGCATTTGATGGTACCCAGGTTCTGCTGGT 14428003 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 |||| || |||||||| ||||| ||| | | ||||||||| ||||||||| Sbjct 14428004 TGCTCTTGCGATTGCAGGCGTCCTTGTATAACATGTACGGAGTGCCGGTCTC 14428055 >seq28 Length=18419168 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | ||||| || || || ||||||||| || ||| || | Sbjct 12497618 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCA 12497677 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| | |||| || | ||| || ||||| || ||||||||||| Sbjct 12497678 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTG 12497737 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || | | || | || || | ||||| || || | || | Sbjct 12497738 TCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 12497797 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| ||||| | || |||||||| Sbjct 12497798 GTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497832 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | ||||| || || || ||||||||| || ||| || | Sbjct 12497846 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCA 12497905 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| | |||| || | ||| || ||||| || ||||||||||| Sbjct 12497906 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTG 12497965 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || | | || | || || | ||||| || || | || | Sbjct 12497966 TCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 12498025 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| ||||| | || |||||||| Sbjct 12498026 GTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12498060 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | ||||| || || || ||||||||| || ||| || | Sbjct 12497390 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCA 12497449 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| || ||||| || ||||||||||| Sbjct 12497450 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTG 12497509 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || | | || | || || | ||||| || || | || | Sbjct 12497510 TCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 12497569 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| ||||| | || |||||||| Sbjct 12497570 GTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476555549684760