Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq5309 107 6e-20 seq3092 107 6e-20 seq10 107 6e-20 seq3938 104 7e-19 seq11 104 7e-19 seq15 100 9e-18 seq5 98.7 3e-17 seq5261 82.4 2e-12 >seq5309 Length=973 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 241 GCCGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 300 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 301 CCGGGTTTCGGC 312 >seq3092 Length=1268 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 620 GCCGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 561 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 560 CCGGGTTTCGGC 549 >seq10 Length=29046025 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 25660114 GCCGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 25660055 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 25660054 CCGGGTTTCGGC 25660043 Score = 86.0 bits (94), Expect = 2e-13 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 |||||| |||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 28511966 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTT 28512020 Score = 82.4 bits (90), Expect = 2e-12 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 || ||| |||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 28245053 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTT 28244999 Score = 82.4 bits (90), Expect = 2e-12 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 || ||| |||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 28245922 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTT 28245868 Score = 82.4 bits (90), Expect = 2e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| | ||||||||||| | |||| ||||||||||| | Sbjct 29013106 GCTGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATTTGAAGGACCCTGGTTCAATC 29013047 Query 2829 CCGGGCTT 2836 || || || Sbjct 29013046 CCAGGTTT 29013039 >seq3938 Length=1152 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 529 GCCGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAGTC 470 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 469 CCGGGTTTCGGC 458 >seq11 Length=28208075 Score = 104 bits (114), Expect = 7e-19 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 2761 TGTTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTG 2820 |||| | ||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 15626554 TGTTCAAGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTG 15626495 Query 2821 GTTCAACCCCGGGCTTCAGC 2840 |||| | |||||| ||| || Sbjct 15626494 GTTCGATCCCGGGTTTCGGC 15626475 Score = 100 bits (110), Expect = 9e-18 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3027466 ATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCG 3027525 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 3027526 ATCCCGGGTTTCGGC 3027540 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3028227 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3028286 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3028287 CCGGGTTTCGGC 3028298 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||| |||||||||||||| | | Sbjct 6415566 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTTCGATC 6415507 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 6415506 CCGGGTTTCGGC 6415495 >seq15 Length=26085978 Score = 100 bits (110), Expect = 9e-18 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 2761 TGTTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTG 2820 || || | || ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 14442842 TGCTTGTCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTG 14442783 Query 2821 GTTCAACCCCGGGCTTCAGC 2840 |||| | |||||| ||| || Sbjct 14442782 GTTCGATCCCGGGTTTCGGC 14442763 >seq5 Length=33351511 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 20261698 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 20261639 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 20261638 CCGGGTTTCGGC 20261627 >seq5261 Length=980 Score = 82.4 bits (90), Expect = 2e-12 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 || ||| |||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 259 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTT 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847980690945