Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq28 116 3e-21 >seq28 Length=18419168 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 12497869 CTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 12497928 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | |||| || || |||||| ||| || ||| | | | Sbjct 12497929 GATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATTTTAGCCTTGACATT 12497988 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| |||||||| Sbjct 12497989 CTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 12498048 Query 35725 AAATATCTGCATTCTGT 35741 ||| ||||||||| ||| Sbjct 12498049 AAAGATCTGCATTTTGT 12498065 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 12497413 CTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 12497472 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | |||| || || |||||| ||| || ||| | | Sbjct 12497473 GATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACGTT 12497532 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| |||||||| Sbjct 12497533 CTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 12497592 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 12497593 AAAGATCTGCAT 12497604 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 12497641 CTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 12497700 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | |||| || || |||||| ||| || ||| | | Sbjct 12497701 GATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATTTTAGCCTTGACGTT 12497760 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| |||||||| Sbjct 12497761 CTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 12497820 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 12497821 AAAGATCTGCAT 12497832 Score = 102 bits (112), Expect = 7e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 12497108 CTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 12497167 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | |||| || || |||||| ||| || ||| | | Sbjct 12497168 GATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACGTT 12497227 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| |||||||| Sbjct 12497228 CTCAATGGTGTCACTGGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGGGTTTTCAC 12497287 Query 35725 AAATATCTG 35733 ||| ||||| Sbjct 12497288 AAAGATCTG 12497296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450740964212280