Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq28 116 4e-21 seq18 84.2 2e-11 >seq28 Length=18419168 Score = 116 bits (128), Expect = 4e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| ||||| || ||||| ||||| || || ||||||||| Sbjct 12497834 CCGCCCCTCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 12497893 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 12497894 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 12497953 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || ||||| ||||| || | ||||| | || || Sbjct 12497954 ATGCCTTCTTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 12498013 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 || || || ||||| || || || | ||||| || || || |||||||||||| Sbjct 12498014 TCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATTTTGTTT 12498067 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| ||||| || ||||| ||||| || || ||||||||| Sbjct 12497378 CCGCCCCTCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 12497437 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 12497438 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 12497497 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || ||||| ||||| || | ||||| | || || Sbjct 12497498 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACC 12497557 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | ||||| || || || ||||| Sbjct 12497558 TCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497604 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| ||||| || ||||| ||||| || || ||||||||| Sbjct 12497606 CCACCCCTCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 12497665 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 12497666 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 12497725 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || ||||| ||||| || | ||||| | || || Sbjct 12497726 ATGCCTTCTTTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACC 12497785 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | ||||| || || || ||||| Sbjct 12497786 TCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497832 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||| || | ||| || | || ||||| || ||||| ||||| || || ||||||||| Sbjct 12497072 TCCACCCCGGAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 12497131 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 12497132 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 12497191 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||||||||| || || ||||| ||||| || | ||||| | || || Sbjct 12497192 AATGCCTTCTTTGTCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAAC 12497251 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTG 134710 || || || ||||| || || || | ||||| || || || || Sbjct 12497252 CTCAAGTGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTG 12497296 >seq18 Length=24512808 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 8542 TCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCC 8601 || |||| |||||||| ||| | ||| | || ||||| || ||||||||||| ||| | Sbjct 14426696 TCAAACAAACGCCACAGGCCCATCGGCATCGGAGTGCAGGGGCTGGCCGACGCCTTTATC 14426637 Query 8602 ATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAA 8661 || |||| || | ||| || | ||||| | |||||||| || |||| ||| Sbjct 14426636 CTGATGCGTTATCCTTTCGAGAGTGATGAAGCTCAACTGCTCAACTTACAAATCTTTGAA 14426577 Query 8662 ACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGC--CCGAGAATTGGGCACGT 8719 ||| | || |||| || | || |||||||| | || || |||| || ||| ||| Sbjct 14426576 ACGATCTACTACGCTGCGCTGGAGGCCAGCTGCGAGCTGGCGGCCGAACAT--GGCCCGT 14426519 Query 8720 ACGAATCGTACGCGGGCAGCCCTG 8743 |||| | ||||| ||| | |||| Sbjct 14426518 ACGAGACCTACGCTGGCTGTCCTG 14426495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505339388419320