Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7 111 1e-19 seq25 96.9 3e-15 seq24 96.9 3e-15 seq2 89.7 4e-13 >seq7 Length=31027439 Score = 111 bits (122), Expect = 1e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||||| |||||| || || ||||| ||||| | ||||||| |||| Sbjct 6112585 TGATGGCTCTGCCACCCTGTCATGCTTTGTGCCAGTTCTACGTCTCAGATGGTGAGCTGT 6112644 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 ||||||| || || || | ||||| ||||| || || || ||||| || ||||| || | Sbjct 6112645 CATGTCAGTTATACCAGCGTTCAGGAGACATCGGCCTGGGTGTCCCCTTCAACATTGCCA 6112704 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACA 41197 | ||||| || ||||| || ||||| || || Sbjct 6112705 GCTATGCCCTACTCACATACATGATCGCCCA 6112735 >seq25 Length=19457651 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| ||| | | || ||||| ||||||||||| || ||||||||||| || || Sbjct 18108226 CAGGAAGTCCAAGTGACCGAGGCACGCTGTTTTTATGGTTTCCAAATTGCCATGGAGAAC 18108285 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| || || |||||||| || || || || ||||||||||| ||| Sbjct 18108286 ATTCACTCTGAGATGTACAGCCTACTTATTGACACGTACATCAAGGAT 18108333 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | |||||||| | | |||||| | || |||||||| ||||||||||| |||| Sbjct 18107792 TGCTGAAGGAAAATCCACGTCGCTTTGTCATCTTCCCAATTCAGTATCATGACATCTGGC 18107851 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782 | ||||| || || || |||| || || |||||||| ||||| || Sbjct 18107852 AGATGTATAAGAAGGCCGAGGCCTCTTTCTGGACAGCTGAAGAGGT 18107897 >seq24 Length=19702765 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCC 44185 || ||| | || |||||||| | || ||||| || || || |||||||| ||||| ||| Sbjct 12661779 GAGCGATTAGTAGCGTTTGCGGCAGTCGAAGGGATCTTTTTCTCAGGATCATTTGCTGCC 12661720 Query 44186 ATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATA 44245 || || ||| | |||||| |||||||||||||||| | || | || |||||| | || Sbjct 12661719 ATCTTCTGGCTGAAGAAAAGAGGTTTGATGCCTGGACTCACCTACTCCAATGAGCTCATC 12661660 Query 44246 AGTCGTGATGA 44256 ||| | ||||| Sbjct 12661659 AGTAGAGATGA 12661649 >seq2 Length=37257225 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/151 (73%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 19550 TGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTAA 19609 |||||||||| || | ||||| ||||| || ||||||||||| | ||| | | | || Sbjct 25090538 TGCACATTATCATTTTTGATGAGTTGGATGCCATCTGTAAGCAGCGTGGTACAGCAGCAA 25090479 Query 19610 AT------GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTA 19663 ||||| ||||||||||| |||||||| || || || ||| | |||||||| Sbjct 25090478 GCAGCACCGGAGTCCATGACACTGTGGTCAATCAGCTGCTATCCAAAATTGACGGTGTGG 25090419 Query 19664 ACCAACTGAATAATATTTTAGTTATTGGCAT 19694 | ||||| || ||||| | ||||| || || Sbjct 25090418 AGCAACTCAACAATATCCTTGTTATAGGTAT 25090388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397410752242705