Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq25 96.9 4e-15 seq18 82.4 1e-10 >seq25 Length=19457651 Score = 96.9 bits (106), Expect = 4e-15 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | || |||||||| |||||| || |||||||| || |||| ||||| Sbjct 18110021 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGGCCTGGCATAAGGCCCCTCTTCT 18109962 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||| ||| |||| || ||| || ||||| ||||||||||| ||||||||| ||||| Sbjct 18109961 TCAGCCAGAAAATTGCAGCAAAA-GACCCAGAGAAGAAGATTCCCTCCACAGCAGCAAAA 18109903 Query 122797 GC 122798 || Sbjct 18109902 GC 18109901 >seq18 Length=24512808 Score = 82.4 bits (90), Expect = 1e-10 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 ||||||||| |||||||| | ||| ||||| || | |||| | || || || || Sbjct 14427930 CTCATCCTTGCTGGTGTACTCCACAATCTCTGTGCACAGGTTGCTGCATTTGATGGTACC 14427989 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| ||||| ||||| || |||||||| | |||||| || || || Sbjct 14427990 CAGGTTCTGCTGGTTGCTCTTGCGATTGCAGGCGTCCTTGTATAACATGTACGGAGTGCC 14428049 Query 111385 CGTCTCCGTCTGTGA 111399 ||||||||||| || Sbjct 14428050 GGTCTCCGTCTGAGA 14428064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627958669413600