Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq25 93.3 5e-14 seq18 84.2 2e-11 >seq25 Length=19457651 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 |||||||| ||| ||||| ||||||||||||||||| || || ||| ||||||||||| Sbjct 18109901 GCTTTTGC-TGCTGTGGAGGGAATCTTCTTCTCTGGGTCTTTTGCTGCAATTTTCTGGCT 18109959 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | ||||| ||||| ||||| | |||||||| || || || Sbjct 18109960 GAAGAAGAGGGGCCTTATGCCAGGCCTCACCTTCTCCAATGAACTCAT 18110007 >seq18 Length=24512808 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || |||||||||| || | |||||||| || | ||||| |||||||||||| Sbjct 14427955 ATCTCTGTGCACAGGTTGCTGCATTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTGCGA 14428014 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || |||||||||||||| |||||||||| || |||||||| Sbjct 14428015 TTGCAGGCGTCCTTGTATAACATGTACGGAGTGCCGGTCTC 14428055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548460752873040