Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq28 179 4e-40 seq18 89.7 6e-13 seq25 82.4 9e-11 >seq28 Length=18419168 Score = 179 bits (198), Expect = 4e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || || || || |||||||| || || |||||||||||| | | Sbjct 12498061 AATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 12498002 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||||||||| |||||||| || || ||||| |||||||| Sbjct 12498001 TGACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCA 12497942 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 12497941 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 12497882 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | |||| ||||| ||||| || || || || ||||||| Sbjct 12497881 TATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCT 12497843 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || || |||||||||||| | || Sbjct 12497832 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 12497773 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||||||||| |||||||| || || ||||| ||||||||| Sbjct 12497772 GACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 12497713 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| ||| Sbjct 12497712 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAT 12497653 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || ||||||| | ||||| Sbjct 12497652 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTGAGGGGTGG 12497606 Score = 172 bits (190), Expect = 6e-38 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || || |||||||||||| | || Sbjct 12497604 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 12497545 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| ||||| |||||||| || || ||||| ||||||||| Sbjct 12497544 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 12497485 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| ||| Sbjct 12497484 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAT 12497425 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || || ||||||| Sbjct 12497424 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCT 12497387 Score = 168 bits (186), Expect = 8e-37 Identities = 173/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 27409 CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGAT 27468 || |||||||| || || || || |||||||| || || |||||||||||| | |||| Sbjct 12497296 CAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACACTTGAGGTTGAGCCCAGTGAC 12497237 Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528 | ||||| || | ||||| ||||| |||||||| || || ||||| |||||||||||| Sbjct 12497236 ACCATTGAGAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAG 12497177 Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588 | || || |||||||| ||||| || || |||| || ||||| | ||||| ||| || Sbjct 12497176 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAATATC 12497117 Query 27589 CAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGAC 27634 || ||||| ||||| || || || || | || || || ||||||| Sbjct 12497116 CAGAAGGAGTCCACCCTCCACCTGGTTCTCCGCCTCCGGGGTGGAC 12497071 >seq18 Length=24512808 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| || || || ||||||| || | || || ||||||||||| | |||||| Sbjct 14427947 ACTCCACAATCTCTGTGCACAGGTTGCTGCATTTGATGGTACCCAGGTTCTGCTGGTTGC 14428006 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 |||| ||||| ||||||||||| |||||||||| || |||||||| ||| |||| Sbjct 14428007 TCTTGCGATTGCAGGCGTCCTTGTATAACATGTACGGAGTGCCGGTCTCCGTCTGAGACT 14428066 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 | |||||||| ||| | || | ||||| || || Sbjct 14428067 CAATGATGGCGTACCACAGCTGCTGAGCCTTCACGAC 14428103 >seq25 Length=19457651 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 |||||||| |||||| ||||| ||||| |||||||| || | | ||||||||||| Sbjct 18109901 GCTTTTGCTGCTGTGGAGGGAATCTTCTTCTCTGGGTCTTTTGCTGCAATTTTCTGGCTG 18109960 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || ||| ||||||| |||||||| || | || || || || || ||| Sbjct 18109961 AAGAAGAGGGGCCTTATGCCAGGCCTCACCTTCTCCAATGAACTCATC 18110008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570243809131920