Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq15 102 1e-16 seq1 96.9 4e-15 >seq15 Length=26085978 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 32661 ATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATT 32720 ||||| ||| |||||| || | |||||||||||| | || | | |||| || | Sbjct 7913845 ATAGCATCAGCTCTGTGGTGGTACTACATCTCTAAAGGTGTGGAGTTTTTAGACACAGTG 7913786 Query 32721 TTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTT 32780 |||||||| ||||| ||||| |||||||| | ||||| ||||||| |||||||| | Sbjct 7913785 TTCTTCATCATGAGGAAGAAGTTTAACCAGATCAGCTTCCTGCACGTCTACCACCACTGC 7913726 Query 32781 ACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACAG 32831 |||||||| | | | | ||||| || | |||||| | | ||||| ||| Sbjct 7913725 ACCATGTTCATTCTCTGGTGGATTGGCGTCAAATGGGTCCCCGGAGGCCAG 7913675 >seq1 Length=37510255 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 32674 TGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGA 32733 |||||| || ||| | || || || | |||||||| || || | || ||||| | Sbjct 23796852 TGTGGTGGTACTTTGTGTCAAAGGGGGTTGAATATCTGGACACAGTGTTTTTCATCCTTC 23796911 Query 32734 GAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTT 32793 | ||||| || ||||| || | |||||||||||| || ||||| | |||||||| ||| Sbjct 23796912 GTAAGAAGTTCAACCATGTCACCTTTTTGCACGTTTATCACCACTGCACCATGTTCACTC 23796971 Query 32794 TAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACAG 32831 | | ||||| || || || ||| ||||||| |||||| Sbjct 23796972 TGTGGTGGATTGGCATCAAGTGGGTTGCAGGTGGACAG 23797009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603110371101840