Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq5 113 6e-20 >seq5 Length=33351511 Score = 113 bits (124), Expect = 6e-20 Identities = 268/398 (67%), Gaps = 8/398 (2%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||| ||| |||| | ||| || | || || || || || || ||||||||| Sbjct 5427473 CCACTGAGTAAGGAGGAGGAGGCGTTCCCAGTGGCATATTCCATTGTCATTCACCACAAG 5427532 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || ||| |||||| | ||||| ||| |||| ||| || ||||| ||||||||| || Sbjct 5427533 GTCCAGAATTTCGAGAGGCTCCTCAGGTCCATATACAGTCCTCAGAATCTCTACTGCATC 5427592 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCA-TCCG-GGGCG-TCTCGGCCATCGCCAGG 13847 || || || || || || || || | | ||||| || ||||| | | Sbjct 5427593 CATGTAGATAAAAAAGCCCCTGA---GTCCACTATGAGGGCGATCAGTGCCATTGTCGAT 5427649 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 ||| | ||| || | |||| |||| | | | ||||| || | | ||||||| Sbjct 5427650 TGCATTGATAATGTTTTCTTGGCTAGCCGGTTTGAACATGTGGTCTATGCCAGCTGGAGT 5427709 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCC-CCCGTCAAGTGGAG 13966 ||||| ||||| ||| ||| |||||| ||| || || || | ||| |||| Sbjct 5427710 CGCGTCCAGGCTGACATCAATTGCATGAAGGATCTTTACCAGGCCAGCAGTC-GTTGGAA 5427768 Query 13967 GTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026 |||| | |||||||||| ||| ||||||||| |||| |||||||| ||||| ||||| Sbjct 5427769 GTACTTCATCAACCTGTGTGGGCAGGACTTCCCCATCAAAACCAACCTAGAGATAGTGCG 5427828 Query 14027 GGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGA 14064 || || || || || | || ||| |||||||| Sbjct 5427829 TGCCCTTAAAGCACTAGCTGGTGCCAACAGCCTGGAGA 5427866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658662283964160