Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq28 136 3e-27 >seq28 Length=18419168 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| ||||| |||||| | || || ||||| || || || Sbjct 12497832 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 12497773 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| || |||||||||||||| || || || || Sbjct 12497772 GACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 12497713 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || ||||||| | ||| | ||||| ||||| Sbjct 12497712 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAT 12497653 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || |||| ||||| || ||||||| || Sbjct 12497652 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTGAGGGGTGGTAT 12497603 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| ||||| |||||| | || || ||||| || || || Sbjct 12498060 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 12498001 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| || |||||||||||||| || || || || Sbjct 12498000 GACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 12497941 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || ||||||| | ||| | ||||| ||||| Sbjct 12497940 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAT 12497881 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || |||| ||||| || |||| || || Sbjct 12497880 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTGAGGGGCGGTAT 12497831 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| ||||| |||||| | || || ||||| || || || Sbjct 12497604 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 12497545 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| || |||||||||||||| || || || || Sbjct 12497544 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 12497485 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | ||| | ||||| ||||| Sbjct 12497484 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAT 12497425 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || |||| ||||| || |||| || || Sbjct 12497424 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTGAGGGGCGGTAT 12497375 Score = 120 bits (132), Expect = 3e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 26991 CAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGAC 27050 ||||| ||||| ||||| ||||| |||||| | || || ||||| || || || ||| Sbjct 12497296 CAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACACTTGAGGTTGAGCCCAGTGAC 12497237 Query 27051 TCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAG 27110 | ||||||| ||||| ||||| || |||||||||||||| || || || || ||| Sbjct 12497236 ACCATTGAGAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAG 12497177 Query 27111 CGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATT 27170 | | || | || ||||| || ||||||| | ||| | ||||| ||||| || Sbjct 12497176 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAATATC 12497117 Query 27171 CAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| ||| | || ||||| | || | |||||||| Sbjct 12497116 CAGAAGGAGTCCACCCTCCACCTGGTTCTCCGCCTCCGGGGTGG 12497073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434867617840320