Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq7 118 1e-21 >seq7 Length=31027439 Score = 118 bits (130), Expect = 1e-21 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || |||||||| || || || || || | | ||||| ||||||||| | || Sbjct 6112575 GATCTTCCCCTGATGGCTCTGCCACCCTGTCATGCTTTGTGCCAGTTCTACGTCTCAGAT 6112634 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || |||||||| || ||| | || || || || |||||||| || | || || || ||| Sbjct 6112635 GGTGAGCTGTCATGTCAGTTATACCAGCGTTCAGGAGACATCGGCCTGGGTGTCCCCTTC 6112694 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||||||| || || || || ||||| ||||||||||| ||| || Sbjct 6112695 AACATTGCCAGCTATGCCCTACTCACATACATGATCGCCCATATC 6112739 Score = 118 bits (130), Expect = 1e-21 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 || ||| ||||||||||| ||||| || || || || ||||||||||| || || || | Sbjct 6112739 GATATGGGCGATCATGTATGTGAGTAGGGCATAGCTGGCAATGTTGAAGGGGACACCCAG 6112680 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 || |||||||| || || || || | ||| || |||||||| |||| | ||||||||| Sbjct 6112679 GCCGATGTCTCCTGAACGCTGGTATAACTGACATGACAGCTCACCATCTGAGACGTAGAA 6112620 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||| | | || || || || || |||||||| || ||||| Sbjct 6112619 CTGGCACAAAGCATGACAGGGTGGCAGAGCCATCAGGGGAAGATC 6112575 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || |||||||| ||||| || |||| || ||||| ||||| || ||| || ||| | Sbjct 6110509 GGTGTGAAGATTTGGGATGCCAACGGCTCCCGAGAGTTTCTTGATAAGAATGGATTCACT 6110568 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 || ||||| || ||||||||||| || || || ||||| |||||||| ||||| || Sbjct 6110569 GAGCGTGAGGAAGGTGACTTGGGCCCCGTGTATGGCTTCCAATGGAGACATTTTGGAGCA 6110628 Query 34442 GAGTA 34446 ||||| Sbjct 6110629 GAGTA 6110633 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || ||||| |||||||| ||||| || || || ||||||||||| || ||||| Sbjct 6110633 TACTCTGCTCCAAAATGTCTCCATTGGAAGCCATACACGGGGCCCAAGTCACCTTCCTCA 6110574 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | ||| || ||| || ||||| ||||| || |||| || ||||| |||||| Sbjct 6110573 CGCTCAGTGAATCCATTCTTATCAAGAAACTCTCGGGAGCCGTTGGCATCCCAAATCTTC 6110514 Query 7019 ACCCC 7023 || || Sbjct 6110513 ACACC 6110509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448210059761520