Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq28 84.2 2e-11 >seq28 Length=18419168 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| || ||||||||||| || ||||| || || || |||| || || | Sbjct 12498063 AAAATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 12498004 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || | ||| ||||| ||||| ||||||||||| |||| | Sbjct 12498003 AGTGACACCATTGAGAAT--GTCAAGGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAG 12497946 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || |||||||| || || |||| || | |||| | ||||||| | Sbjct 12497945 ACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACT 12497886 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| || ||| ||| | || |||| ||||| || | ||||| Sbjct 12497885 ACAATATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTGAGGGGCGG 12497834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355821887401107