Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq28 113 3e-20 >seq28 Length=18419168 Score = 113 bits (124), Expect = 3e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || |||||||| || || || || ||||| || || ||||| || Sbjct 12498063 AAAATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 12498004 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | |||| | ||||||||||| | || ||||| Sbjct 12498003 AGTGACACCATTGAGAATGTCAAGGCTAAAA-TCCAGGACAAAGAAGGCATTCCCCCAGA 12497945 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || ||||||||||| || |||||||| | ||||| | ||| || Sbjct 12497944 CCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 12497885 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||| || || || |||||||| Sbjct 12497884 CAATATCCAGAAGGAGTCCAC 12497864 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || || || || ||||| || || ||||| ||| Sbjct 12497832 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 12497773 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||||| ||||||||||| | || ||||| || Sbjct 12497772 GACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 12497713 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | ||||| | ||| ||||| Sbjct 12497712 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAT 12497653 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 12497652 ATCCAGAAGGAGTCCAC 12497636 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || || || || ||||| || || ||||| ||| Sbjct 12497604 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 12497545 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||||| ||||||||||| | || ||||| || Sbjct 12497544 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 12497485 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||| | ||||| | ||| ||||| Sbjct 12497484 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAT 12497425 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 12497424 ATCCAGAAGGAGTCCAC 12497408 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 23614 CAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGAC 23673 ||||| || || |||||||| || || || || ||||| || || ||||| ||| ||| Sbjct 12497296 CAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACACTTGAGGTTGAGCCCAGTGAC 12497237 Query 23674 ACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAG 23733 || |||| | | || ||||| ||||||||||| | || ||||| || ||| Sbjct 12497236 ACCATTGAGAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAG 12497177 Query 23734 CGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATA 23793 | | || ||||| ||||| || |||||||| | ||||| | ||| ||||| || Sbjct 12497176 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAATATC 12497117 Query 23794 CAAAAAGAGTCCAC 23807 || || |||||||| Sbjct 12497116 CAGAAGGAGTCCAC 12497103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337971119825228