Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq24 96.9 3e-15 >seq24 Length=19702765 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||| || || || || || || | || | ||| ||||| |||||||| || || Sbjct 12661649 TCATCTCTACTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAAACCTCTTTTCTTC 12661708 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || || |||||||| || || || || || ||||| || || ||||||||| Sbjct 12661709 AGCCAGAAGATGGCAGCAAATGATCCTGAGAAAAAGATCCCTTCGACTGCCGCAAACGCT 12661768 Query 4692 ACTAATCG 4699 |||||||| Sbjct 12661769 ACTAATCG 12661776 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| ||||| || || || || || ||||| |||||||| || ||||| | |||||||| Sbjct 12664554 TACCAAGTTCTCATTGACAATGCCATCACTTGCTGCAAAGAAAGCCAAGATGTGAGATAT 12664613 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||||| | || |||||||| ||| ||| |||||||| || ||| || | |||||| || Sbjct 12664614 AAAGTGTTTCTCCTCAGGCTTCAGTCTTTCCCAGTGGGCCAGATCCTTTGATAAATCCAC 12664673 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 5041 TTAAATCA--ACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCA 5098 ||||||| || ||||| || ||||| ||||| || | |||| ||||||||| ||| Sbjct 12664970 TTAAATCTTCACCTCTTCGACTGTCCAGAACGATGCCTGGGCTTGTTTGTACATTTTCCA 12665029 Query 5099 AATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTAGGTGTAAGAAGCGG 5158 || || |||||||||||||||| |||||||||| || | ||| || | ||||| || Sbjct 12665030 CATGTCTGGATACTGAATCGGAAAGATGACAAATCGCTTTTTGTTCTGTCTGAGAAGAGG 12665089 Query 5159 TTC 5161 || Sbjct 12665090 CTC 12665092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427000983205553