Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq7 125 5e-24 >seq7 Length=31027439 Score = 125 bits (138), Expect = 5e-24 Identities = 131/171 (77%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| ||||||||||||| ||||| ||||||||||| || ||||| || |||| ||| Sbjct 6110643 CATGTCTTTGTACTCTGCTCCAAAATGTCTCCATTGGAAGCCATACACGGGGCCCAAGTC 6110584 Query 27549 TCCCTCTTCCCTGTGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 27605 || || || | |||| ||| || |||| || | ||| |||| ||| |||||||| Sbjct 6110583 ACCTTCCTCAC---GCTCAGTGAATCCATTCTTATCAAGAAACTCTCGGGAGCCGTTGGC 6110527 Query 27606 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||| ||||| || || ||||| || |||||||| | ||||| || || Sbjct 6110526 ATCCCAAATCTTCACACCTTTCTCTGAAAGCTCTTTCGCATTTGTAGAACC 6110476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369465134030171