Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq28 114 3e-20 >seq28 Length=18419168 Score = 114 bits (126), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||| ||||| |||| | || | |||||| Sbjct 12497849 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCT 12497908 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||| | | || ||||| || || Sbjct 12497909 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 12497968 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| |||||| |||| | | |||| ||| ||| || ||||| || || Sbjct 12497969 TGGATTTTAGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATG 12498025 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || || ||||| |||| ||||||||| Sbjct 12498026 GTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATTTT 12498063 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||| ||||| |||| | || | |||||| Sbjct 12497621 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCT 12497680 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||| | | || ||||| || || Sbjct 12497681 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 12497740 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| ||||| |||| | | |||| ||| ||| || ||||| || || Sbjct 12497741 TGGATTTTAGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATG 12497797 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || ||||| |||| |||||| Sbjct 12497798 GTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497832 Score = 100 bits (110), Expect = 7e-16 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 || ||| | ||| || || || || || ||||| || ||||| ||||| |||| | || Sbjct 12497078 CCGGAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGT 12497137 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | || || Sbjct 12497138 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCC 12497197 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || || ||||| ||||| |||| | | |||| ||| ||| || || Sbjct 12497198 TTCTTTGTCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACCTC 12497254 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 ||| || || || ||||| || || || ||||| |||| ||| Sbjct 12497255 AAGTGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTG 12497296 Score = 100 bits (110), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||| ||||| |||| | || | |||||| Sbjct 12497393 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCT 12497452 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || ||||| || || Sbjct 12497453 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 12497512 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| ||||| |||| | | |||| ||| ||| || ||||| || || Sbjct 12497513 TGGATTTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATG 12497569 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || ||||| |||| |||||| Sbjct 12497570 GTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153682708923811