Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq25 187 4e-42 seq17 140 5e-28 seq22 96.9 5e-15 >seq25 Length=19457651 Score = 187 bits (206), Expect = 4e-42 Identities = 208/278 (75%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 8308 CCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCC 8367 ||| |||||||| | || || || ||| | | || | |||| ||| | || || Sbjct 19206292 CCCGTTGACGTTATTGCATACCAGTTTCTGCAGCGAGGCCGTGTTGATGATGTCAAAGCC 19206233 Query 8368 CACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCAT 8427 || || ||||| || |||||||||||||||||| | || ||||||||| ||| |||| Sbjct 19206232 GACTTCGCCGCCAAACGTGCTGGGCTTCCAGTACTCAGGCGAGCAGATGGGGTTTCCCAT 19206173 Query 8428 GAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTT 8487 ||||||||| || ||| | ||||| |||| ||| | ||| |||| || ||||||||||| Sbjct 19206172 GAGGCCTTTCAGTGAGTAAGGAGCACCCATCTCCACCATGGTCTCTCCAAAGATGGCGTT 19206113 Query 8488 GGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547 ||| || |||||||| || | | |||||||||||||||| ||| || || |||||||| Sbjct 19206112 GGGCCGTGGCTTTTCAACGAGAAGACCGGTGTACAGCTCCATAGCATCAACATCTCCGTA 19206053 Query 8548 AAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || || || || || |||||||| || |||| Sbjct 19206052 CAGTTCCTCCAGCTCCGCTGCCATCTCCTTATCACCTG 19206015 Score = 120 bits (132), Expect = 4e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||||| |||||||| || | |||||| ||| ||||| || Sbjct 19204343 TCACCAATCAAGATGAGTCTTGTGGTCTGAAAGCGCCTCTCGTCGTCCCAATCTGGGTGC 19204284 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 | || || ||||| || ||||| | ||||||||||| ||||||||||| ||||||||| Sbjct 19204283 ACCTGCTTAAGAACGTCACACACACGGTTGTGTTCCCGAAGCCAGATAGTAGCGTACATC 19204224 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 ||||| || || ||||| || ||||| || || || ||||| Sbjct 19204223 ATGAGGCCTGGGACCAGACCGAAAGCTTCGTGGCCTACAGC 19204183 Score = 96.9 bits (106), Expect = 5e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 9068 CATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTT 9127 |||| |||||||| | |||||||| || | ||||||||||||| | || || || | Sbjct 19204728 CATCGGGCATGAGCGGGTGCCAGTGGTAAAGGGTGTTAAACTCGGACGAGATCCGGTTCT 19204669 Query 9128 GGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGTAG 9186 |||||||||| ||| | ||| || || || || | ||| |||| ||| |||||| Sbjct 19204668 GGTACTGGAAACGATGGTT-AAACAGGAGCTCTGGATCAAATTTAAGCTTAAAGTGGTAG 19204610 Query 9187 CCGCTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 |||| || ||||| ||||||| | | || ||| ||||||||||| || Sbjct 19204609 GCGCTCAGGTGCTGCACGTATTCCTCAATGACAATCTTGATGGTTTCACC 19204560 Score = 91.5 bits (100), Expect = 2e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 9672 TAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAAAACTGGTGCGTGAAATGTTGGC 9731 |||||||||||||||||||| || ||||| | || |||||||| ||||| || || Sbjct 19203741 TAGTGAAGGCCGGGCCTCGCTTCATGTCAGTTTTGAAGAACTGGTGTGTGAAGTGCTGAG 19203682 Query 9732 CAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCGGGAGTGAAGGTCCTCC-GAAGA 9790 |||| ||||| ||||| | ||||||| ||| || || || |||| || ||| || | Sbjct 19203681 CAAAGAAGGCGAACATGAGATTGGTGCGCTGTGGGTCAGGGATGAACTTCTTCCTGACCA 19203622 Query 9791 AGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTTTGTTTTACCTG 9839 || || | | || ||| | | |||| ||||||| | || |||||| Sbjct 19203621 GGAACTTCTCCACCACCGTCT-TCACATCAGGCAGCTCTTTTCTACCTG 19203574 >seq17 Length=25916894 Score = 140 bits (154), Expect = 5e-28 Identities = 184/255 (72%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | || || || || || ||||| || |||| ||| |||| || ||||| Sbjct 12841379 TCACCGATCAGTATAAGGCGTGTTGTTTGGAAAAGACGCTCATCATTCCAGTCCGGATGC 12841320 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || ||||| | |||||||| | ||||||||| ||||||||||| ||||| |||||| Sbjct 12841319 TCCTGCTTCAGGATGTCGCACACACGGTTGTGTTCTCTGAGCCAGATTGTGGCATACATC 12841260 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||| || || |||||||| || || || || || || || | || | | || | Sbjct 12841259 ATGAGGCCGGGGACCAGGCCGAACGCTTCATGGCCCACTGCGAACCGTAACTCGTCACGA 12841200 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 | | || || ||| ||| | ||||| |||||||| ||| || ||||||| || Sbjct 12841199 ATGTGAGGTGGGTAGTGCATCTCGACCTGAACGTCTTTAACCAGAGGAGGATACACCTCT 12841140 Query 9472 CCGTCAATCATCTGA 9486 ||||| | || |||| Sbjct 12841139 CCGTCCAACACCTGA 12841125 Score = 129 bits (142), Expect = 8e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 || |||||| | || ||||| | || || || ||||||||| |||||||| | |||||| Sbjct 12843066 TTTACGATCTCAAATCCCACTTTGCCACCAAACGTGCTGGGCATCCAGTACTCAGGGGAG 12843007 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 ||||| || |||| || ||||||||||| | || || |||| ||| | ||| || Sbjct 12843006 CAGATAGGATTTCCCATAAGCCCTTTGAGGGAATAGGGGGCACCCATCTCTACCATGGTC 12842947 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || || | || ||| | | || || ||||||| || |||||||| ||||||||| Sbjct 12842946 TCTCCAAACACAGCATTGTGCCTTGGTTTCTCCACCAGAAAGCCGGTGTAGAGCTCCACA 12842887 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 | | || ||||| || ||| | | || || ||||| | ||| || || ||| Sbjct 12842886 GAGTTCACATCTCCATACAGGCTCTTCAGATCTGCAGCAAGCTCTTTATCGCCT 12842833 Score = 116 bits (128), Expect = 5e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 || |||||| | || ||||| | || || || ||||||||| ||||||| | |||||| Sbjct 12828147 TTTACGATCTCAAATCCCACTTTGCCACCAAACGTGCTGGGCATCCAGTAATCAGGGGAG 12828088 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 ||||| || |||| || ||||||||||| | ||||| |||| ||| | ||| | Sbjct 12828087 CAGATAGGATTTCCCATAAGCCCTTTGAGGGAATAGGGAGCACCCATCTCTACCATGGTA 12828028 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || || | || ||| | | || || ||||||| | |||||||| ||||||||| Sbjct 12828027 TCTCCAAACACAGCATTGTGCCTTGGTTTCTCCACCAGAAGGCCGGTGTAGAGCTCCACA 12827968 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 | | || |||| || ||| | | || || |||| || ||| || || ||| Sbjct 12827967 GAGTTCACAGCTCCATACAGGCTCTTCAGATCTGCAGTGAGCTCTTTATCGCCT 12827914 >seq22 Length=19874160 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || ||||| || |||| |||||||| || |||||||| || | ||| ||||| ||| Sbjct 12336542 CCTATAATAATAAGTCTGGTGGTCTGAAAGAGTTGCTCATCTCCCCAGGTGGGATGCTCT 12336483 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 | || || | || ||||| | ||||||||| | ||||| | ||||||||||| | Sbjct 12336482 TTCTTTAGGATGTCACACACACGGTTGTGTTCACGCAGCCACAGGGTGGCGTACATGCTT 12336423 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACT 9414 | || || | ||||||||| |||| || || | ||||| || | | | || ||| Sbjct 12336422 AAGCCTGGCAACAGGCCAAACACCTCCTGCCCAATAGCCATTTGCTTTTCTGGTGGAACT 12336363 Query 9415 TCGGGAGGATAGATCATGTGCAC 9437 ||||| ||| |||||| ||| Sbjct 12336362 GATGGAGGGTAGTTCATGTTCAC 12336340 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || ||||||||||||||||| | || || || ||| ||| |||| || ||| Sbjct 12341749 CCTCCAAAAGTGCTGGGCTTCCAGTATTCAGGTGAACATATGGGGTTTCCCATAAGACCT 12341690 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || ||||| || || ||||||| || | ||||||| ||||| ||||| | || || Sbjct 12341689 TTTAGGGAAAATGGCGCCCCCATTTCTACCATGCTCTGTCCGAATATGGCATCAGGCCGT 12341630 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 | ||| || | ||| || | | || | |||| ||| || | ||||| || || Sbjct 12341629 GTCTTCTCTAGCAATAAAGCAGGATAAAATTCCATAGCATCAATCTCTCCATAGAG 12341574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716793095672640