Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq28 131 4e-25 seq20 91.5 4e-13 >seq28 Length=18419168 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| || || || || || |||||||| ||||| || || ||| Sbjct 12497829 CAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA--GCCCAGTG 12497772 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| || || |||||||||||||| || || || ||||||| Sbjct 12497771 ACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAGC 12497712 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || || Sbjct 12497711 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAATA 12497652 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 12497651 TCCAGAAGGAGTCCACCCTCCACCTGGT 12497624 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| || || || || || |||||||| ||||| || || ||| Sbjct 12497601 CAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA--GCCCAGTG 12497544 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| || || |||||||||||||| || || || ||||||| Sbjct 12497543 ACACCATTGAGAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAGC 12497484 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || || Sbjct 12497483 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAATA 12497424 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 12497423 TCCAGAAGGAGTCCACCCTCCACCTGGT 12497396 Score = 127 bits (140), Expect = 5e-24 Identities = 160/217 (74%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || |||||||| || || || || || |||||||| ||||| || Sbjct 12498063 AAAATGC---AGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA- 12498008 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| ||||| ||||| || || |||||||||||||| || || | Sbjct 12498007 -GCCCAGTGACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAAGAAGGCATTCCCC 12497949 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| | || ||||| ||||| || ||||| |||||||| | || || ||| Sbjct 12497948 CAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCG 12497889 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || |||| || || || || || || || || Sbjct 12497888 ACTACAATATCCAGAAGGAGTCCACCCTCCACCTGGT 12497852 Score = 123 bits (136), Expect = 6e-23 Identities = 154/209 (74%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| || || || || || ||||| || ||||| || || ||| Sbjct 12497296 CAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACACTTGAGGTTGA--GCCCAGTG 12497239 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| || || |||||||||||||| || || || ||||||| Sbjct 12497238 ACACCATTGAGAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAGC 12497179 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || || Sbjct 12497178 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAATA 12497119 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| || || || || || || || ||| Sbjct 12497118 TCCAGAAGGAGTCCACCCTCCACCTGGTT 12497090 >seq20 Length=22470590 Score = 91.5 bits (100), Expect = 4e-13 Identities = 89/112 (79%), Gaps = 7/112 (6%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||||||||| | || || ||||| |||||||||||||||| Sbjct 17893530 AAAATGC---AGATCTTCGTGAAAACGTTGACCGGCAAAACCATCACCCTCGAGGTGG-- 17893584 Query 177975 AGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||| || |||||||| ||||| |||||| |||||||| ||||| ||||| Sbjct 17893585 AGCCCAGTGACACCATTGAGAATGTCAAAGTCAAGATTCAAGACAAGGAAGG 17893636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203587135569154