Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq28 131 2e-25 >seq28 Length=18419168 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||||| | |||||| || || ||| ||||||||| || || |||||||| Sbjct 12497834 CCGCCCCTCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 12497893 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||||||||| || ||||| | ||| ||||| | |||| Sbjct 12497894 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 12497953 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || || |||||| |||||| ||| | | | ||||| || | ||| ||| Sbjct 12497954 ATGCCTTCTTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 12498013 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || || || || ||||| || || || || |||||||| || Sbjct 12498014 TCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATTTT 12498063 Score = 129 bits (142), Expect = 5e-25 Identities = 163/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| || || ||| ||||||||| || || |||||||| |||||||| Sbjct 12497615 AGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGG 12497674 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| ||||| | ||||| || || Sbjct 12497675 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCT 12497734 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 |||||| |||||| ||| |||| | || ||||| || | ||| ||||| | Sbjct 12497735 TTGTCCTGGATTTTAGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAG 12497790 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || ||||| || || || || |||||||| Sbjct 12497791 GGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497832 Score = 127 bits (140), Expect = 2e-24 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||||| | |||||| || || ||| ||||||||| || || |||||||| Sbjct 12497378 CCGCCCCTCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 12497437 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| || || ||||| | ||| ||||| | |||| Sbjct 12497438 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 12497497 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | || || |||||| |||||| ||| |||| | || ||||| || | ||| Sbjct 12497498 ATGCCTTCTTTGTCCTGGATTTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTC 12497553 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || ||||| || || || || |||||||| Sbjct 12497554 AACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497604 Score = 113 bits (124), Expect = 4e-20 Identities = 163/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || ||| ||||||||| || || |||||||| Sbjct 12497073 CCACCCCGGAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 12497132 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| || || ||||| | ||| ||||| | |||| Sbjct 12497133 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 12497192 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | || || |||||| |||||| ||| |||| | || ||||| || | ||| Sbjct 12497193 ATGCCTTCTTTGTCCTGGATTTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTC 12497248 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTG 41859 ||||| | || || || || || ||||| || || || || ||||| Sbjct 12497249 AACCTCAAGTGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTG 12497296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462250020229200