Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq478 93.3 4e-14 >seq478 Length=201109 Score = 93.3 bits (102), Expect = 4e-14 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || ||||| || ||||||||||| || ||||| |||||||||||||| ||||| Sbjct 188852 ATGTAGGTGTCGATCAGCAGGCTGTACATCTCAGAGTGGATGTTCTCCATGGCGATCTGG 188911 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC-ACGTAGAATCGTTCC 17347 || || || || || | |||||| | || ||||||||| ||| ||| |||||| Sbjct 188912 AAACCATAGAAACACCTGGCTTCTGTTACCTGAACTTCCTGCGT-GAAGCGTTCC 188965 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || ||||| || ||||||||||| || ||||| | |||||||||||| ||||| Sbjct 175792 ATGTAGGTGTCGATCAGCAGGCTGTACATCTCAGAGTGAACGTTCTCCATGGCGATCTGG 175733 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC-ACGTAGAATCGTTCC 17347 || || || ||||| | ||| |||| | ||||||||| ||| ||| |||||| Sbjct 175732 AAACCATAGAAGCACCTGGCCTCCGGCACCTGAACTTCCTGCGT-GAAGCGTTCC 175679 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| || ||||| || |||| ||||||||| |||| |||| Sbjct 176178 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 176119 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 | | ||| || || || |||||||| ||||| ||||| || ||||| || Sbjct 176118 TCAGCCAGAAGATGGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCAC 176070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| || ||||| || |||| ||||||||| |||| |||| Sbjct 188368 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 188427 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 | | ||| || || | ||||||||| ||||| ||||| || ||||| || Sbjct 188428 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCAC 188476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517525719779640