Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq80 444 7e-120 seq332 93.3 5e-14 >seq80 Length=2229659 Score = 444 bits (492), Expect = 7e-120 Identities = 1265/1938 (65%), Gaps = 11/1938 (1%) Strand=Plus/Plus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| || |||| | ||||| || | || | || || || || || Sbjct 1867711 TTCTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTCATGTCTTTCAGCAGGTGGGGGTTG 1867770 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | || || || || || | || || || ||||| || || ||||| || | || Sbjct 1867771 ACGATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 1867830 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | ||||| || || |||| || || ||||| || || || ||||| || |||| || Sbjct 1867831 ATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGACGCCGTGGGCATCGGCGCCAGCAGC 1867890 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 | || || || | |||| | | ||| || || || || | | ||| | ||| || Sbjct 1867891 AGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 1867950 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCT 53386 |||| |||| || || | || | ||| || || ||| Sbjct 1867951 TCCGTCGGTGTCTTGCTCCACATGTCGTACTGCAGGACGCCCCTGCTGACGGGGGAGCCT 1868010 Query 53387 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 53446 | || || ||||| || || || | || || || || |||||||| | || || Sbjct 1868011 TCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCG 1868070 Query 53447 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 53506 || || ||||| || || |||| | || || || || || |||| || || || Sbjct 1868071 TAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGCGCCTCGGGGCTTTCGAACGGG 1868130 Query 53507 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 53566 ||| | | || || |||||||| || ||||| || || || || || || || || Sbjct 1868131 TAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTGGACTCCGATTCCAATTGGCCTGTGG 1868190 Query 53567 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 53626 | ||| || || | || ||||| || | || || || || || || || || || || Sbjct 1868191 CGCTTGTTGGACCTCTCGGCTTCGGGGACCGGGTAGTAGTTGATTTCAATGATCTTGTTC 1868250 Query 53627 AGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCA-TC 53685 |||||| | || ||||||||| |||| |||||| || ||| | |||| || Sbjct 1868251 AGGTTTTTCACGATTACTTTGGTCACAGATGCCAGTTTTTTGAAGTCATAA-GTCCGCTC 1868309 Query 53686 TA---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT-TAG 53741 | | || ||||||| | || || || |||||||||||||| || ||||| | | | Sbjct 1868310 TGGCGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACAAACCGCCACCTCGTCTTG 1868369 Query 53742 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 53801 | | || | | | ||| ||||| || || || ||||||||||| || | || | Sbjct 1868370 GCTG-GTGTACTCCACGACCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCT 1868428 Query 53802 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAA 53861 | ||||| ||||| |||| ||||| || || || || ||| | ||||| || ||||| Sbjct 1868429 GCTGATTGCTCTTCCTGTTGCACGCGTCTTTGTAGAGCATGTACGGCGTTCCGGTTTCCG 1868488 Query 53862 TCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCT 53921 |||| || || || || || | ||| | ||||||| | | || ||| Sbjct 1868489 TCTGCGACTCGATGATGGCGTACCAAAGCTGCTGAGCCTTCACCACCCGCTTCACCCTCC 1868548 Query 53922 TTTCTCTTTCGTATAGTGTATACAATCGT-TCAAACTCGTCTCCCCAAACATTGTCCAAT 53980 || | |||||| || || || | | |||||||| || ||||| | ||| | Sbjct 1868549 CCTCCTTCTCGTATGTCGTGTA-AAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCGAGC 1868607 Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 || ||||| || || |||||||||| ||||| ||| || || |||||| ||||| Sbjct 1868608 CCGGGACACTCGTCGGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCGCTTCATG 1868667 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || || || || ||||| || || || || || |||| ||| || ||||| ||||| Sbjct 1868668 AACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCCCTGGCTCTCTGCTCCTCTTTTCCC 1868727 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 || ||||| || || || ||||| | | | || | |||||||| |||| ||| || Sbjct 1868728 GTGTTCTTCTTCAGCTCCAGGAATTCAAACACGTCGAAGTGCCACGGCTCCAGGTACATC 1868787 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | |||| |||| |||||| || ||||| || | ||| | ||| ||||| || ||| Sbjct 1868788 GCGAAGGCTCCGGGCCTTTTGTTGCCGCCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAA 1868847 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 ||||||| ||| || | | || || || || ||||| |||| ||| ||||| || Sbjct 1868848 ACTCTCAGCATGGGGACCAACCCGTTCGAGTTCCCGTTGGTGCCGGCGATGTAGCTCCCG 1868907 Query 54281 CTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 | || | || || | | | || || || || || ||| || || | ||| Sbjct 1868908 GTTGCTCTGATGCAGCTGACCGCGACGCCGATGCCGCCAGCGGATTTGGAAATGAGGGCG 1868967 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 || | || | || || || |||||||| || || || || ||||| || || || Sbjct 1868968 CACTGCTTCAGGGTGTCGTAAATGCCCTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAG 1869027 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 ||||| |||| || | || | || || || || || | ||| || || ||||| || Sbjct 1869028 CAGCTGGACAGCTGTGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTG 1869087 Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGA 54520 ||||| || || || || || |||||||||||||| || | ||| || ||| || Sbjct 1869088 AACCACTTCTCTGACAGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTCCCGTGG 1869147 Query 54521 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 54580 || || || | || | ||| | ||||||||| || | || | | |||| ||| | Sbjct 1869148 ATCCCAACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGACC 1869207 Query 54581 TTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 54640 |||||| ||||| |||| ||| || || ||||| ||||||| || || ||||| Sbjct 1869208 CTCAGCAGATAGGAGCGCTCCAGAGTCTTGAACCCAAAGAAGTTGTAGGAGAAATCTCGG 1869267 Query 54641 TCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATA 54700 ||||| || || | |||||||| ||||| | | || | || | || | Sbjct 1869268 TCGTAGATTATGGCCGAGTTGAGGCGGTCCTTGTTCTCCAGGACGATGTCGAGCGTCTTC 1869327 Query 54701 CTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTC 54760 | | || || || || || | || ||| ||||||||||| | | || | | Sbjct 1869328 TTGGCGATCATGGGCGAGTGGCGCTTGTTCAGAGGGTTGACATAGTTGTACAGGTCTTCC 1869387 Query 54761 ATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCG 54820 ||||| || || || | ||| || || || ||||| || ||||| ||||| || || ||| Sbjct 1869388 ATCACGTCGCTGAACATTTTCTTGGTCTCCTTGTGCAGGTTTGAGACGGCGATCCTTGCG 1869447 Query 54821 GCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGA 54880 || || ||||| || || || |||| || || ||||| || || ||||| | ||| Sbjct 1869448 GCGAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGCGTGGCGGCGATCTCGGCCGCCAGC 1869507 Query 54881 GTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATT 54940 ||||| | || ||||| || || || | || | || ||||| |||||||| | || Sbjct 1869508 GTGTCGAGCTCCACCGTGGTGACACCGCTGTACAAACCCTGGATCACCTTCATGGTGATC 1869567 Query 54941 TTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AATACGAGATGT 54999 | | || || | | ||||| ||| | || || || || |||| || || || || Sbjct 1869568 TGAGCCGGGTCCACAAAATCAGAGTTCAGGCTGTAGCA-AAGCTTCTGGATGCGCGAGGT 1869626 Query 55000 GATTTTATCAAACATGAC 55017 ||||||||| |||||||| Sbjct 1869627 GATTTTATCGAACATGAC 1869644 >seq332 Length=374033 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 54770 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 54829 || |||| ||| || || |||||||| || || || ||||| || | ||| || || ||| Sbjct 73033 CTGAATACTTTCTTGGTCTCTTTGTGCAGGTTGGACACGGCGATCCGAGCAGCCAGGATG 73092 Query 54830 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAAT 54889 || || || ||||||| || || ||||| || | || || | ||||||||||| Sbjct 73093 GCGTAGTCTGGATGTTTGGTGGTGAGGGTGGCAGCGGTCTCTGCAGCCAGAGTGTCCAGC 73152 Query 54890 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 || || || || |||||| | || | || ||||| |||||||| Sbjct 73153 TCCACGGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 73196 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/181 (71%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 53410 CTTCT-CAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCT 53468 ||||| |||| || ||||| || ||||| | ||| |||| || ||||| || ||||||| Sbjct 70382 CTTCTGCAGCCAGCTCACAGCTGGCCTCCAGAGCAGCGTAGTAGATGGTCTCAAAGATCT 70441 Query 53469 TCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGT 53528 | || || || |||||| |||| |||||||||||| | || ||||| || | Sbjct 70442 GAATGTTGAGCAACTGGGCTTCCGGGCTTTCAAATGGATAACGCATCAGGATAAAAGCAT 70501 Query 53529 CTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTT 53588 | || | || || || || || || || || | || | ||| ||||| ||||||| | Sbjct 70502 CAGCCAGACCCTGGACGCCGATTCCAATTGGCCGGTGGCGCTTGTTAGACCTTTCAGCCT 70561 Query 53589 C 53589 | Sbjct 70562 C 70562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593698793669040