Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq35 147 3e-30 >seq35 Length=3987237 Score = 147 bits (162), Expect = 3e-30 Identities = 200/277 (72%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 83120 GGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCAC 83179 ||||||||||| | || || | ||||||||| |||||||||| ||||||| | |||| | Sbjct 2947032 GGCGTGCCGTCGGGCCCGACGAGGAACTTCTCAAAGTTCCAGGACACGTCGCTCCGGCTC 2947091 Query 83180 ACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGC 83239 || || |||| ||||||| |||||||| || || | ||||||||| || Sbjct 2947092 ACCGGGCTCCAGATGATGAGCTTGGGGTCGCCCATCAGGGACGAGGGGTCGTCGCTGGGG 2947151 Query 83240 GCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCT 83297 ||| || ||| ||||| ||||| ||||| || || |||| || || || | Sbjct 2947152 TACGGGAGCTGCTCCTTGAGGAACGCGAACAGCGGGTGGGCGTCCTT--CCCATTCACGT 2947209 Query 83298 CGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCA 83357 | |||||||| |||| || || ||||| ||||| || ||||||||||||| ||||| Sbjct 2947210 CCACCTTCTCGAGGAGCTGGAACTTGGGCTCAAAGCCATTTCCAGGACGGACGTACTTCA 2947269 Query 83358 GGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 |||| | || ||| || |||||| | ||| ||||| Sbjct 2947270 GGGAGGCCAGGATTTCCTCATTCTTGCAGTTCTCCTG 2947306 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/136 (76%), Gaps = 6/136 (4%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAAC-CCAAGCACTACCAGCCCCCGAGCT--CCTA 83447 |||| || ||||||||||| || |||||| || || | || |||||| ||| | || Sbjct 2947698 CCTGATGGCCGAACTGGTTGCA-GGGAACTCCCAGGATCACGAGCCCCTT-GCTGGCGTA 2947755 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | || || |||||||||||||| ||||| |||| ||| || | |||||||| |||| Sbjct 2947756 CCTGTCG-TGGAGCTCGTTCATCTGGGTGTAATCCCTGACGGTCGTGCCTCAGAGAGACG 2947814 Query 83508 CTACGTTCTCGATGAG 83523 | ||||||||||| || Sbjct 2947815 CGACGTTCTCGATCAG 2947830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608773414592920