Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq23 134 1e-26 seq478 123 3e-23 seq3 105 7e-18 seq146 93.3 4e-14 >seq23 Length=4589928 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || ||||| || || ||||||||| | || || || || Sbjct 3277159 AACATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCC 3277218 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | ||||| |||||||||||| | || Sbjct 3277219 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 3277277 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || ||||| |||||||| || | |||||||| ||||| Sbjct 3277278 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 3277337 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | || || || || || |||| | |||||||| Sbjct 3277338 CAACATCCAGAAGGAGTCAACCCTTCACCTGGTCCTGCGTCTCAGGGGCGG 3277388 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || ||||| ||||| || || ||||||||| | || || ||| | Sbjct 3279122 AAACATGCAGATCTTTGTCAAAACCCTCACTGGGAAGACCATCACCCTTGAGGTGGAACC 3279181 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||| | | | |||| | |||| || || | ||||| |||||||||||| | | Sbjct 3279182 AAGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTG 3279240 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | || |||| || ||||| |||||||| || | |||||||| |||| Sbjct 3279241 ACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACT 3279300 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | ||||||||||| || |||| || ||||| || |||| | ||||| ||| Sbjct 3279301 ATAACATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGGC 3279353 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || ||||||||| | || || || ||| Sbjct 3279354 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATCACCCTTGAGGTGGAGCCCAGT 3279413 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||||||| | ||||| Sbjct 3279414 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 3279472 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 3279473 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 3279532 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || |||| || || || || |||| ||||||| || Sbjct 3279533 CATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGTCTGAGGGGGGG 3279580 >seq478 Length=201109 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| ||||||||||||| || || ||||| ||||||| || || ||||| Sbjct 176043 GGAGAGCGTGTGGTGGCCTTCGCTGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCT 176102 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||| ||||| ||||||||||||||| Sbjct 176103 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTC 176162 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 176163 ATCAGCAGAGACGAGG 176178 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| ||||||||||||| || || ||||| ||||||| || || |||||| Sbjct 188503 GGAGAGCGTGTGGTGGCCTTCGCTGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCC 188444 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 |||| || ||||| ||||| | ||||| |||||||| ||||| ||||||||||||||| Sbjct 188443 TCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTC 188384 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 188383 ATCAGCAGAGACGAGG 188368 Score = 114 bits (126), Expect = 1e-20 Identities = 100/122 (82%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||||||| | ||| |||||||| |||| || | |||||| | Sbjct 175472 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGAGTCTCTGAAGGATGAAGAGCGCTAC 175530 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct 175531 TTCATCTCCCACGTGTTGGCCTTCTTCGCCGCCAGTGACGGCATCGTCAACGAGAACCTG 175590 Query 116804 GT 116805 || Sbjct 175591 GT 175592 Score = 114 bits (126), Expect = 1e-20 Identities = 100/122 (82%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||||||| | ||| |||||||| |||| || | |||||| | Sbjct 189169 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGAGTCTCTGAAGGATGAAGAGCGCTAC 189111 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct 189110 TTCATCTCCCACGTGTTGGCCTTCTTCGCCGCCAGTGACGGCATCGTCAACGAGAACCTG 189051 Query 116804 GT 116805 || Sbjct 189050 GT 189049 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| |||||||| || || ||||| | |||||||| || |||| ||| Sbjct 175290 GAGCCGCTGCTGAAGGAGAACCCTCGGCGCTTCGTCGTCTTCCCCATCCAGTACCACGAC 175349 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||| ||||| ||||||||||| | ||||||||| Sbjct 175350 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCGTTCTGGACGGCAGAGGAGGTG 175403 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| |||||||| || || ||||| | |||||||| || |||| ||| Sbjct 189351 GAGCCGCTGCTGAAGGAGAACCCTCGGCGCTTCGTCGTCTTCCCCATCCAGTACCACGAC 189292 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||| ||||| ||||||||||| | ||||||||| Sbjct 189291 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCGTTCTGGACGGCAGAGGAGGTG 189238 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| || || ||| | ||||| || |||||| | ||||| |||||||||| || || || Sbjct 175676 GGTGGAACGCTTCACGCAGGAAGTTCAGGTGCCGGAGGCCAGGTGCTTCTATGGTTTCCA 175735 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||||| ||||| || ||||| | || || |||||||| ||| Sbjct 175736 GATCGCCATGGAGAACGTTCACTCTGAGATGTA--CAGCCTGCTGATCGACACCTAC 175790 >seq3 Length=10095097 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| || ||||| || || || || |||||| ||||||| |||||| ||| || Sbjct 6542965 GGGGAGCGACTTGTGGCTTTTGCAGCTGTGGAGGGCATCTTCTTCTCGGGCTCTTTTGCT 6543024 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| | |||||| ||||| | |||||||||||||||||||| | | ||| || || Sbjct 6543025 GCCATCTATTGGCTAAAGAAGAGAGGCCTCATGCCCGGCCTGACGTACTCCAATGAACTG 6543084 Query 117152 ATCTCCAGGGACGAGG 117167 || |||||| |||| Sbjct 6543085 ATTAGCAGGGATGAGG 6543100 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 116583 TGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGC 116642 |||| || ||||||||| | |||||||| || || ||||| || || |||||||| ||| Sbjct 6541489 TGCTCCGGGAGAACCCCAGGCGGTTCGTCATCTTTCCCATCCAGTATCCGGACATCTGGA 6541548 Query 116643 GCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT 116694 |||||||| |||| |||| || |||||||| || ||||||||||| || Sbjct 6541549 AGATGTACAAGCAGGCACAGGCCTCTTTCTGGACAGTGGAGGAGGTGGATCT 6541600 >seq146 Length=1105081 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/142 (76%), Gaps = 8/142 (6%) Strand=Plus/Plus Query 73583 CAACCACGCCGTGCTGCTGGTCGGCTACGGCGTC-----GAGAAC-GGAGTGCCCTACTG 73636 ||||||||| ||||||||||| ||||||||| | || ||| |||| | ||||| Sbjct 200955 CAACCACGCAGTGCTGCTGGTGGGCTACGGCAGCTGCCCGAAAACCGGAGAGAAGTACTG 201014 Query 73637 GGTGTTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGTCCGGCA 73696 | | ||||||||| ||||||| | |||||||||||||||||| ||||| ||| ||| Sbjct 201015 GATCGTCAAGAACAGCTGGGGCGCCACCTGGGGCGAGAACGGCTACTTCCGTATCC-GCA 201073 Query 73697 GA-ACGTCAACGCGTGCGGCAT 73717 || | | ||| ||||| ||| Sbjct 201074 GAGGCAGCGACGAGTGCGCCAT 201095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515199409142480