Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq80 132 4e-26 seq23 100 2e-16 seq26 82.4 7e-11 >seq80 Length=2229659 Score = 132 bits (146), Expect = 4e-26 Identities = 444/683 (65%), Gaps = 30/683 (4%) Strand=Plus/Plus Query 133284 TCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACC 133343 |||| || ||||||||||| || ||||| || || | |||||||||||| ||||| | Sbjct 1867828 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGACGCCGTGGGCATCGGCGCCAGC 1867887 Query 133344 AACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCAC 133403 | || ||| || ||||||| ||| || || || || |||||||||||| Sbjct 1867888 AGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 1867947 Query 133404 AGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACCC 133463 || | || || | || | || | ||| | |||| | ||| Sbjct 1867948 AGGTC--------------CGTCGGTGTCTTGCTCC-ACATGTCGTACTGCAGGACGCCC 1867992 Query 133464 CTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCAG 133523 ||||| || || | | ||||| || ||||| ||| ||||||||||||| Sbjct 1867993 CTGCTGACGGGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAG 1868052 Query 133524 CTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTTGACGAACCTG-G 133581 || ||||||| ||||| |||| ||||| || || || || ||||| | | ||| | Sbjct 1868053 CTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAACATCTGGAT-GTTGA-GCAGCTGCG 1868110 Query 133582 CATCGTCGCTATCGTAGGCG--ATG--TCGAGAAGAACAAACGCGTCGGCCAAACCCTGT 133637 | ||| ||| ||| | | | | | || ||| ||| ||||| ||||| || || Sbjct 1868111 CCTCGGGGCTTTCGAACGGGTAACGCATCAAGATGAAG----GCGTCTGCCAAGCCTTGG 1868166 Query 133638 ATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAG 133697 | |||| || || || | || || ||| |||||| | |||| || ||| Sbjct 1868167 ACTCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACCTCTCGGCTTCGGGGACCGGGTAG 1868226 Query 133698 TGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGC 133757 | ||||| || ||||||||||| || || ||||| | ||| |||| | | ||| Sbjct 1868227 TAGTTGATTTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACAGATGCCAGT 1868286 Query 133758 AAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCT 133817 ||||| | ||| || | ||| |||| || |||||| || || ||| Sbjct 1868287 TTTTTGAAGTCATAAGTCC--GCTCTGGCGT-GACGTACATGTTGAGAGCGATGGAGGCC 1868343 Query 133818 AGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGTTG 133877 ||||||||||| ||| ||||| | | | |||| |||| ||| | ||| |||||| Sbjct 1868344 AGATTACAAACCGCCACCTCGTCTTGGCTGGTGTACTCCACGACCTCCGTGCACAGGTTG 1868403 Query 133878 CTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTAT 133937 ||||| ||||||||||||| || | |||||||| | ||||| || ||||| Sbjct 1868404 CTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTCTTTGTAG 1868463 Query 133938 AGCATGTACGGCCCGCCGGTTTC 133960 |||||||||||| |||||||| Sbjct 1868464 AGCATGTACGGCGTTCCGGTTTC 1868486 >seq23 Length=4589928 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || || ||||| ||| || Sbjct 3277370 ACCAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 3277311 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || | |||||| || || || |||||||||||||| Sbjct 3277310 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 3277251 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || || Sbjct 3277250 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTC 3277191 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||| ||||||||| Sbjct 3277190 CCAGTGAGGGTCTTGACAAAGATCTGCATG 3277161 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || ||||| || ||||| || || || ||||| ||| || | Sbjct 3279333 CAAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCAGACAGGGTGCGGCCATCTTCCA 3279274 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || || |||| || | |||||| || || || |||||||||||||| | Sbjct 3279273 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 3279214 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 | || || || | |||| |||||| | || | || ||||| | ||| | || || Sbjct 3279213 TCTTGGCCTTCACGTTCTCGATGGTGTCACTTGGT-TCCACCTCAAGGGTGATGGTCTTC 3279155 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| ||||| ||||||||| Sbjct 3279154 CCAGTGAGGGTTTTGACAAAGATCTGCATG 3279125 >seq26 Length=4473900 Score = 82.4 bits (90), Expect = 7e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| || |||||||| || || ||||| |||||| |||||||||||||| ||| Sbjct 562408 CTTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGA 562349 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCC 118636 | |||||||||||||||||||| || || Sbjct 562348 TCAGACGCTGCTGATCGGGAGGGATTCC 562321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433814152102516