Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 6e-15 seq15 89.7 9e-13 >seq13 Length=6456249 Score = 96.9 bits (106), Expect = 6e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| |||||| || |||||||| | || | | |||||||||| ||||||||||| ||| Sbjct 57186 TGGTGGTACTACATCTCCAAAGGAGTGGAGTTCCTGGATACGGTCTTTTTCATACTGAGG 57245 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || || || || || || || || || ||||| || ||||| | ||| ||||| | || Sbjct 57246 AAGAAGTTCAACCAAGTCAGCTTCCTCCACGTCTACCATCACTGTACAATGTTCATCCTG 57305 Query 52021 GGATGGATAGGTATTAAATGG 52041 | ||||| || || || ||| Sbjct 57306 TGGTGGATCGGCATCAAGTGG 57326 >seq15 Length=5448219 Score = 89.7 bits (98), Expect = 9e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 ||| || |||| | |||| ||| | | ||||| || || ||||| |||| || || Sbjct 3441938 GATGGCAGGAGCTCTGTGGTGGTATTTCGTCTCCAAGGGCATCGAATATCTGGACACAGT 3441997 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 ||||| || || ||||||||||| || ||||||| || || ||||| || || || | Sbjct 3441998 GTTTTTTATCCTGAGGAAAAAATTCAACCAGGTTACCTTCCTGCACGTCTACCACCACTG 3442057 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAG 52056 || ||||| || || | ||||| || || || ||| | || ||||| ||| Sbjct 3442058 CACCATGTTCACGCTCTGGTGGATCGGCATCAAGTGGGTGGCAGGAGGACAG 3442109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923161337702920