Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq96 107 2e-18 seq309 105 8e-18 seq146 100 3e-16 seq35 96.9 4e-15 seq158 95.1 1e-14 seq1990 84.2 3e-11 seq321 84.2 3e-11 seq2211 82.4 9e-11 >seq96 Length=1850235 Score = 107 bits (118), Expect = 2e-18 Identities = 73/81 (90%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 60058 AAAAT-TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 816513 AAAATGTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 816454 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||| |||||| Sbjct 816453 TCACCACTATACTAACGAGGA 816433 >seq309 Length=411200 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 386380 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 386321 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 386320 ACTATACTAACGAGGA 386305 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 384484 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 384543 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 384544 TACTAACGAGGA 384555 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | || |||||||||| ||||||||||||||||||| | ||||||||||||| Sbjct 383447 CTCCCCGTCGGGAAATCGAACCCCGGTCTCCCGCGTGACAGGCAGCGATACTCACCACTA 383388 Query 60126 TACTACCGAGGA 60137 |||| |||||| Sbjct 383387 CACTAACGAGGA 383376 >seq146 Length=1105081 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 84407 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 84348 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 84347 ATACTAACGAGGA 84335 >seq35 Length=3987237 Score = 96.9 bits (106), Expect = 4e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1387687 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 1387628 Query 60125 ATACTACCGAGGA-TTGA 60141 |||||| |||||| |||| Sbjct 1387627 ATACTAACGAGGAGTTGA 1387610 >seq158 Length=1023182 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1022409 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1022468 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1022469 TACTAACGAGGA 1022480 >seq1990 Length=12098 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| ||| || |||| | ||| ||||||||||||||||||| |||||||| || | | Sbjct 11705 ATGGAAAGCTTGCTCCCCATCAGAGAATCGAACCCTGGTCTCCTGCGTGACAAGCAGGGA 11764 Query 60114 TACTCACCACTATACTACCGAGGA 60137 ||||||||||||||||| ||||| Sbjct 11765 TACTCACCACTATACTAATGAGGA 11788 >seq321 Length=391507 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| ||| || |||| | ||| ||||||||||||||||||| |||||||| || | | Sbjct 308616 ATGGAAAGCTTGCTCCCCATCAGAGAATCGAACCCTGGTCTCCTGCGTGACAAGCAGGGA 308675 Query 60114 TACTCACCACTATACTACCGAGGA 60137 ||||||||||||||||| ||||| Sbjct 308676 TACTCACCACTATACTAATGAGGA 308699 >seq2211 Length=10280 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| | ||||||||||||||| ||||||| |||||||| || | |||||||||| Sbjct 7823 TTGCTCCCCATCAGGGAATCGAACCCCGGTCTCCTGCGTGACAAGCAGGGATACTCACCA 7764 Query 60123 CTATACTACCGAGGA 60137 |||||||| ||||| Sbjct 7763 CTATACTAATGAGGA 7749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571795635056440