Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq7 230 2e-55 >seq7 Length=8378829 Score = 230 bits (254), Expect = 2e-55 Identities = 280/375 (75%), Gaps = 5/375 (1%) Strand=Plus/Minus Query 107680 TACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCC 107739 |||||| || || ||| | || ||| ||||||| ||||| | ||| |||||| ||| Sbjct 3797935 TACAGTGCCT-CTTAGTGAGGAGGAGAATAACTTCCCTATTGCATTCTCTATGGTGATCC 3797877 Query 107740 ATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATAT 107799 ||||||||||||| | ||||| || || || ||||| | ||||| ||||||||||| | Sbjct 3797876 ATGAGAAGATTGAGATGTTTGAGCGACTCCTACGAGCTATTTATGCTCCTCAGAACATCT 3797817 Query 107800 ACTGTGTCCACGTGGATGTGAAGTCCCCAGAG-ACTTTCAAAGAGGCGGTCAAGGCCATT 107858 |||| || || |||||| ||| || || | | | ||| |||| | || |||| || Sbjct 3797816 ACTGCGTACATGTGGATCAGAAATCTCCTTTGGAATATCAGAGAG-CTGTAAAGGGTATA 3797758 Query 107859 ATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCC 107918 |||||||||| || ||||| ||||| |||||||| | | || |||||||| || Sbjct 3797757 GTTTCCTGCTTTCCTAATGTATTCATCGCCAGTAAAACAGAACGTGTCGTTTATGCGTCT 3797698 Query 107919 TGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-GTGCC 107977 ||||||||||| || || || |||||||||||||| ||| |||| || |||| ||||| Sbjct 3797697 TGGTCCAGAGTCCAGGCAGATCTGAACTGTATGGAGGACCTGCTGAAGT-CTCATGTGCC 3797639 Query 107978 ATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGAT 108037 ||||| || | || || || || ||||||||||| ||||| ||||| || ||||| Sbjct 3797638 GTGGAAATATCTGCTTAACACCTGTGGGACAGACTTTCCCATCAAGACAAACAGAGAGAT 3797579 Query 108038 GGTCCTGGCCCTCAA 108052 ||| |||||| || Sbjct 3797578 GGTGACGGCCCTAAA 3797564 Score = 230 bits (254), Expect = 2e-55 Identities = 280/375 (75%), Gaps = 5/375 (1%) Strand=Plus/Minus Query 107680 TACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCC 107739 |||||| || || ||| | || ||| ||||||| ||||| | ||| |||||| ||| Sbjct 3801215 TACAGTGCCT-CTTAGTGAGGAGGAGAATAACTTCCCTATTGCATTCTCTATGGTGATCC 3801157 Query 107740 ATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATAT 107799 ||||||||||||| | ||||| || || || ||||| | ||||| ||||||||||| | Sbjct 3801156 ATGAGAAGATTGAGATGTTTGAGCGACTCCTACGAGCTATTTATGCTCCTCAGAACATCT 3801097 Query 107800 ACTGTGTCCACGTGGATGTGAAGTCCCCAGAG-ACTTTCAAAGAGGCGGTCAAGGCCATT 107858 |||| || || |||||| ||| || || | | | ||| |||| | || |||| || Sbjct 3801096 ACTGCGTACATGTGGATCAGAAATCTCCTTTGGAATATCAGAGAG-CTGTAAAGGGTATA 3801038 Query 107859 ATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCC 107918 |||||||||| || ||||| ||||| |||||||| | | || |||||||| || Sbjct 3801037 GTTTCCTGCTTTCCTAATGTATTCATCGCCAGTAAAACAGAACGTGTCGTTTATGCGTCT 3800978 Query 107919 TGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-GTGCC 107977 ||||||||||| || || || |||||||||||||| ||| |||| || |||| ||||| Sbjct 3800977 TGGTCCAGAGTCCAGGCAGATCTGAACTGTATGGAGGACCTGCTGAAGT-CTCATGTGCC 3800919 Query 107978 ATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGAT 108037 ||||| || | || || || || ||||||||||| ||||| ||||| || ||||| Sbjct 3800918 GTGGAAATATCTGCTTAACACCTGTGGGACAGACTTTCCCATCAAGACAAACAGAGAGAT 3800859 Query 108038 GGTCCTGGCCCTCAA 108052 ||| |||||| || Sbjct 3800858 GGTGACGGCCCTAAA 3800844 Score = 230 bits (254), Expect = 2e-55 Identities = 280/375 (75%), Gaps = 5/375 (1%) Strand=Plus/Minus Query 107680 TACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCC 107739 |||||| || || ||| | || ||| ||||||| ||||| | ||| |||||| ||| Sbjct 3806332 TACAGTGCCT-CTTAGTGAGGAGGAGAATAACTTCCCTATTGCATTCTCTATGGTGATCC 3806274 Query 107740 ATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATAT 107799 ||||||||||||| | ||||| || || || ||||| | ||||| ||||||||||| | Sbjct 3806273 ATGAGAAGATTGAGATGTTTGAGCGACTCCTACGAGCTATTTATGCTCCTCAGAACATCT 3806214 Query 107800 ACTGTGTCCACGTGGATGTGAAGTCCCCAGAG-ACTTTCAAAGAGGCGGTCAAGGCCATT 107858 |||| || || |||||| ||| ||||| | | | ||| || ||| || |||| || Sbjct 3806213 ACTGCGTACATGTGGATCAGAAATCCCCTCCGCAATATCAGAG-GGCTGTGAAGGGTATA 3806155 Query 107859 ATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCC 107918 |||||||||| || ||||| ||||| |||||||| | | || || ||| | || Sbjct 3806154 GTTTCCTGCTTTCCTAATGTATTCATCGCCAGTAAAACAGAACATGTTGTATATACTTCT 3806095 Query 107919 TGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-GTGCC 107977 ||||||||||| || || || |||||||||||||||||| |||| || |||| ||||| Sbjct 3806094 TGGTCCAGAGTCCAGGCAGATCTGAACTGTATGGAAGACCTGCTGAAGT-CTCATGTGCC 3806036 Query 107978 ATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGAT 108037 ||||| || | || || || || ||||||||||| ||||| ||||| || ||||| Sbjct 3806035 GTGGAAATATCTGCTTAACACCTGTGGGACAGACTTTCCCATCAAGACAAACAGAGAGAT 3805976 Query 108038 GGTCCTGGCCCTCAA 108052 ||| |||||| || Sbjct 3805975 GGTGACGGCCCTAAA 3805961 Score = 208 bits (230), Expect = 5e-49 Identities = 275/375 (73%), Gaps = 5/375 (1%) Strand=Plus/Minus Query 107680 TACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCC 107739 |||||| || || ||| | || ||| ||||||| ||||| | ||| |||||| ||| Sbjct 3794355 TACAGTGCCT-CTTAGTGAGGAGGAGAATAACTTCCCTATTGCATTCTCTATGGTGATCC 3794297 Query 107740 ATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATAT 107799 ||||||||||||| | ||||| || || || ||||| | ||||| ||||||||||| | Sbjct 3794296 ATGAGAAGATTGAGATGTTTGAGCGACTCCTACGAGCTATTTATGCTCCTCAGAACATCT 3794237 Query 107800 ACTGTGTCCACGTGGATGTGAAGTCCCC-AGAGACTTTCAAAGAGGCGGTCAAGGCCATT 107858 |||| || || |||||| ||| ||||| || | ||| ||| || || |||| || Sbjct 3794236 ACTGCGTACATGTGGATCAGAAATCCCCTCCGGAATATCAGAGA-GCTGTGAAGGGTATA 3794178 Query 107859 ATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCC 107918 |||||||||| || ||| | ||||| |||||||| | | || | ||||| || Sbjct 3794177 GTTTCCTGCTTTCCTAATATATTCATCGCCAGTAAAATAGAAAATGTCCTATATGCTTCT 3794118 Query 107919 TGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-GTGCC 107977 ||||||||||| || || || |||||||| ||||| || |||| || |||| ||||| Sbjct 3794117 TGGTCCAGAGTCCAGGCAGATCTGAACTGCATGGAGGATCTGCTGAAG-TCTCATGTGCC 3794059 Query 107978 ATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGAT 108037 ||||| || | || || || || ||||||||||| ||| | ||||| || ||||| Sbjct 3794058 GTGGAAATATCTGCTTAACACCTGTGGGACAGACTTTCCCCTCAAGACAAACAGAGAGAT 3793999 Query 108038 GGTCCTGGCCCTCAA 108052 ||| |||||| || Sbjct 3793998 GGTGACGGCCCTAAA 3793984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348255756571602