Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq80 165 2e-35 >seq80 Length=2229659 Score = 165 bits (182), Expect = 2e-35 Identities = 630/982 (64%), Gaps = 44/982 (4%) Strand=Plus/Minus Query 248461 TTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTC 248520 ||||| |||||| | |||||||| ||||||| || || | ||| | | | || || Sbjct 1869638 TTCGATAAAATCACCTCGCGCATCCAGAAGCTTTGCTACAGCCTGAACTCTGATTTTGTG 1869579 Query 248521 GATCATGTGGCCATCGCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACA 248580 || | | ||| || ||| || || ||| | |||| ||| || || ||| Sbjct 1869578 GACCCGGCTCAGATCACCATGAAGGTGATCCAGGGTTTGTACAGCGGTGTCACCACGGTG 1869519 Query 248581 GAACTGGACACCTTAGCTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGACTAC 248640 || || ||||| | || || |||| || || || ||| ||||||||||||| Sbjct 1869518 GAGCTCGACACGCTGGCGGCCGAGATCGCCGCCACGCTGACGACCAAACACCCCGACTAC 1869459 Query 248641 TCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTC 248700 | | || |||| |||||||||||||||| || ||||| || || || | |||| Sbjct 1869458 GCCATCCTCGCCGCAAGGATCGCCGTCTCAAACCTGCACAAGGAGACCAAGAAAATGTTC 1869399 Query 248701 GTCGAAACCATGGCTGACCT-----AC-ATG-----CCTATGGG---------------- 248733 ||| |||| ||||| || ||| ||| || Sbjct 1869398 AGCGACGTGATGGAAGACCTGTACAACTATGTCAACCCTCTGAACAAGCGCCACTCGCCC 1869339 Query 248734 ATGGTCGCC--GATGACG-TCCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGC 248790 ||| ||||| || |||| || ||| |||| | || |||| | ||| ||| || Sbjct 1869338 ATGATCGCCAAGAAGACGCTCGACATCGTCCTGGAGAACAAGG---ACCGCCTCAACTCG 1869282 Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850 || || ||||| | |||||| ||| | ||||||| ||||| || |||||| Sbjct 1869281 GCCATAATCTACGACCGAGATTTCTCCTACAACTTCTTTGGGTTCAAGACTCTGGAGCGC 1869222 Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910 || ||||| || | | | |||||| | | || || ||||||||| | ||| | Sbjct 1869221 TCCTATCTGCTGAGGGTCAACGGCAAGGTGGCCGAGCGCCCGCAGCACATGCTCATGAGG 1869162 Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC-TCGAGACGTACA--CCGGA 248967 ||| | || ||||| ||| | ||||| || ||| | |||||||||||| | | Sbjct 1869161 GTGTCGGTTGGGATCCACGGGACGGACATCGAC-GCGGCCATCGAGACGTACAACCTGCT 1869103 Query 248968 ATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAAC 249027 | || ||| ||| | || || ||| | ||||| |||||||||||||| ||| | Sbjct 1869102 GTCAGAGAA--GTGGTTCACCCACGCCTCCCCGACCCTCTTCAACGCCGGGACCAACCGG 1869045 Query 249028 AATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTAT 249087 |||||| | ||||| || || |||||| |||||||| |||| |||||||| Sbjct 1869044 CCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAGGGCATTTAC 1868985 Query 249088 GACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTC 249147 ||||| || || ||| || ||||| |||| ||| ||||| ||||| || | ||| Sbjct 1868984 GACACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGCTGGCGGCATCGGCGTCGCGGTC 1868925 Query 249148 TCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATC 249207 | |||| |||| | || |||||| || || || ||| | | || | Sbjct 1868924 AGCTGCATCAGAGCAACCGGGAGCTACATCGCCGGCACCAACGGGAACTCGAACGGGTTG 1868865 Query 249208 GTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGCCGA 249267 || ||| | || || | | ||| || | | | | |||||| | ||| | | Sbjct 1868864 GTCCCCATGCTGAGAGTTTACAACAACACTGCTCGCTACGTTGACCAGGGC-GGCAACAA 1868806 Query 249268 AAG----GGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCT 249323 ||| || | ||||| ||||| |||| ||||||| ||| | || || ||||| Sbjct 1868805 AAGGCCCGGAGCCTTCGCGATGTACCTGGAGCCGTGGCACTTCGACGTGTTTGAATTCCT 1868746 Query 249324 GGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCT 249383 ||| |||| ||||||| || || ||| |||||| | ||||||||||||| ||| Sbjct 1868745 GGAGCTGAAGAAGAACACGGGAAAAGAGGAGCAGAGAGCCAGGGACCTCTTCTACGCCCT 1868686 Query 249384 GTGGGTCTCCGACTTGTTCATG 249405 |||| || ||||| |||||||| Sbjct 1868685 GTGGATCCCCGACCTGTTCATG 1868664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073724122796864