Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq80 480 7e-131 seq332 123 2e-23 seq23 91.5 1e-13 >seq80 Length=2229659 Score = 480 bits (532), Expect = 7e-131 Identities = 1096/1635 (67%), Gaps = 35/1635 (2%) Strand=Plus/Plus Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGAT 22425 ||| | ||| ||||| ||| || | | || || ||| ||| |||||| || | Sbjct 1867680 CTGAATGGATCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGCTCCACAGCCCCCT 1867739 Query 22426 GGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCG 22485 | |||| ||||| | ||| || |||| || | || ||||| ||||| | ||| | Sbjct 1867740 CTCCGTCATGTCTTTCAGCAGGTGGGGGTTGACGATCTGGAACTCCCCGGAGAGGACCCT 1867799 Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545 ||| ||| |||||| ||| | | |||| || || ||||| ||||| ||||| || Sbjct 1867800 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 1867859 Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT 22605 || || || || ||||||||||||| ||| || ||| |||| |||||| || | || Sbjct 1867860 AGTGGACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 1867919 Query 22606 TTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATC 22665 || ||| |||| | |||||||||||| || | ||| ||| ||| |||||| || Sbjct 1867920 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTCGGTGTC---TTGCTCCACATGTC 1867976 Query 22666 GTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATAT 22725 ||| |||| ||||| | || | ||| |||||||||||| ||||| || || | | Sbjct 1867977 GTACTGCAGGACGCCCCTGCTGACGGGGGAGCCTTCGTACGTCTCGTAGGGGCCG-AGCT 1868035 Query 22726 CG-CGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCT 22784 || |||| || |||||||||||||||| ||| |||| || || ||||| || || | Sbjct 1868036 CGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAACATCTGGA 1868095 Query 22785 TGTTCAATTCGGCGGCGGC--GACGCTTTCGTACGGCATACGCATCATCACGAACGCGTC 22842 |||| | | || ||| | | ||||||| |||| |||||||| | ||| ||||| Sbjct 1868096 TGTTGAG--CAGCTGCGCCTCGGGGCTTTCGAACGGGTAACGCATCAAGATGAAGGCGTC 1868153 Query 22843 CGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTC 22902 |||| || || || || || || || || | || | || ||| | || || Sbjct 1868154 TGCCAAGCCTTGGACTCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACCTCTCGGCTTC 1868213 Query 22903 GGGCAAAGGATACCAATTCGAATCGATTGTTCT-GTTCAAGTTTCTGGTCACAATT---T 22958 ||| | || || | || || | | || ||| ||||| |||| | ||| ||| | Sbjct 1868214 GGGGACCGGGTAGTAGTT-GATTTCAATGATCTTGTTCAGGTTTTT---CACGATTACTT 1868269 Query 22959 TCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTTGTTGA 23018 | || | | ||||| ||| | | | | || || |||||| Sbjct 1868270 TGGTCACAGATGCCAGTTTTTTGAAGTCATAAGTCCGCTCTGGCGTGACGTACATGTTGA 1868329 Query 23019 CGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTT 23078 ||||| ||||| ||||| || || ||||||||||||| | |||||||| || | | Sbjct 1868330 GAGCGATGGAGGCCAGATTACAAACCGCCACCTCGTCTTGGCTGGTGTACTCCACGACCT 1868389 Query 23079 CGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGC 23138 | || || || ||||| ||||| || ||||||| || ||| ||||| || | |||| Sbjct 1868390 CCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGC 1868449 Query 23139 ACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTC 23198 ||| || |||||||||||||||||||| || || || ||||||||||||||| || Sbjct 1868450 ACGCGTCTTTGTAGAGCATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGGCGT 1868509 Query 23199 GCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGT 23258 ||| | |||||| | || ||| ||| || || | |||||| | || Sbjct 1868510 ACCAAAGCTGCTGAGCCTTCACCACCCGCTTCACCCTCCCCTCCTTCTCGTATGTCGTGT 1868569 Query 23259 ACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGG-ACAC 23317 | | | ||||| || | || | || ||| | || ||||| | | | |||| |||| Sbjct 1868570 AAAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCGAGCCCGGGACACT-CGTCGGGACAC 1868628 Query 23318 ATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGA 23377 || ||| ||| | || | || || || |||| || || || || ||||| || Sbjct 1868629 ATCAGAGACCAGTCTTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGG 1868688 Query 23378 GCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA 23437 |||||||| || || | ||| | | ||||||||| || |||||||| |||| |||| Sbjct 1868689 GCGTAGAAGAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTGTTCTTCTTCAGCTCCAGG 1868748 Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497 || || |||||||| ||||||||||| ||||| | || || || || || || || Sbjct 1868749 AATTCAAACACGTCGAAGTGCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTG 1868808 Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557 ||||||||||| || ||||| || || ||||||||||| ||||| ||||| || || | Sbjct 1868809 TTGCCGCCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAAC 1868868 Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTG-TG 23613 ||||| || ||| ||| || | ||| || |||||| | | | || Sbjct 1868869 CCGTTCGAGTTCCCGTTGGTGCCGGCGATGTAGCTC---CCGGTTGCTCTGATGCAGCTG 1868925 Query 23614 AACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTC 23673 | || || || ||||| || | ||||| || || | ||||| || ||||| ||||| Sbjct 1868926 ACCG-CGACGCCGATGCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTC 1868984 Query 23674 GTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGC 23733 ||| ||||||||||||||||| ||||| | |||| || ||| || |||| || | Sbjct 1868985 GTAAATGCCCTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGG 1869044 Query 23734 TTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCA-TTC---G 23789 | || |||| ||| || |||||| |||||| || || ||| ||| | Sbjct 1869045 CCGGTTGGTCCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAA----CCACTTCTCTG 1869100 Query 23790 ACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGA 23849 ||| || |||||||| |||||||| || || |||||| ||||| || || | | | Sbjct 1869101 ACAGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTCCCGTGGATCCCAACCGACA 1869160 Query 23850 CGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATG 23909 | | ||| | ||||| || || | |||| || |||||| | | | |||||| | Sbjct 1869161 CCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGACCCTCAGCAGATAGG 1869220 Query 23910 AACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGG 23969 | || | || || || || ||||| ||| ||| || || || |||| | ||||| Sbjct 1869221 AGCGCTCCAGAGTCTTGAACCCAAAGAAGTTGTAGGAGAAATCTCGGTCGTAGATTATGG 1869280 Query 23970 CCGAATTCAAACGGT 23984 |||| || | |||| Sbjct 1869281 CCGAGTTGAGGCGGT 1869295 >seq332 Length=374033 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || ||| |||| || ||||| || ||||| | || ||||||| || | ||| | Sbjct 71362 TTTCCACTCGTTTCATGAAGAGATCTGGGATCCACAAGGCAAAGAACAGATCTCTGGCCC 71421 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||| |||||||| |||||| | |||| |||||||| || |||||||||| ||||| Sbjct 71422 TCTGCTCTTCTTTGCCCGTGTTCCTCTTCAGTTCCAAAAATTCAAACACGTCCGAATGCC 71481 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| | |||||||| || || |||| Sbjct 71482 ACGGCTCCAGGTACATAGCAAACGCCCCGGGCCTCT 71517 Score = 116 bits (128), Expect = 3e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 ||||||||||||| ||| || || |||||||| | || || ||||||| || |||| Sbjct 70921 GTGTACTCTACAACTTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGG 70980 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 ||||| || | ||||| | ||||||||||||||||| || || ||||| || |||| Sbjct 70981 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTCCCCGTTTCTGTCTGC 71040 Query 23183 GACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCT 23242 ||||||||||| || ||||| |||||| | || ||| | |||||| || Sbjct 71041 GACTCGATGATGGCGTACCACAGCTGCTGAGCCTTCACCATCCGCCTGGCCCTGCCCTCC 71100 Query 23243 TCCTCGTAC 23251 | ||||||| Sbjct 71101 TTCTCGTAC 71109 >seq23 Length=4589928 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || || || || || |||||| | || || || || Sbjct 3279353 CATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATCACCCTTGAGGTGGAGCCCAG 3279412 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || | || ||||||||||||| | || || ||||| Sbjct 3279413 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 3279472 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| ||||||| || || ||| || || Sbjct 3279473 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 3279532 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| || || || ||||| || | |||||||| || Sbjct 3279533 CATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGTCTGAGGGGGGG 3279580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445749276998160