Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq80 437 1e-117 seq478 93.3 5e-14 seq332 89.7 6e-13 >seq80 Length=2229659 Score = 437 bits (484), Expect = 1e-117 Identities = 1283/1969 (65%), Gaps = 11/1969 (1%) Strand=Plus/Plus Query 62294 CTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62353 |||||||||||| | | || | | | ||||| ||||| || |||| | || Sbjct 1867680 CTGAATGGATCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGCTCCACAGCCCCCT 1867739 Query 62354 CTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCT 62413 ||| || | || | || || || ||||| || | ||||| || || || | || || Sbjct 1867740 CTCCGTCATGTCTTTCAGCAGGTGGGGGTTGACGATCTGGAACTCCCCGGAGAGGACCCT 1867799 Query 62414 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62473 || ||||| || || ||||| || | || | ||||| || || |||| || || || Sbjct 1867800 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 1867859 Query 62474 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62533 ||| || || || ||||| || |||| || | || || || | |||| | | ||| Sbjct 1867860 AGTGGACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 1867919 Query 62534 TTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATA 62593 || || || || | | ||| | ||| || |||| |||| || Sbjct 1867920 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTCGGTGTCTTGCTCCACATGTCGTA 1867979 Query 62594 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTC 62653 || || | || | ||| || || ||| | || || || || || || || | Sbjct 1867980 CTGCAGGACGCCCCTGCTGACGGGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCGGC 1868039 Query 62654 AGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATT 62713 || || | || |||||||| | || |||| || ||||| ||||| |||| | || Sbjct 1868040 GGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTT 1868099 Query 62714 TAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62773 || || || || ||||| || || || ||| | | || || ||||| || || Sbjct 1868100 GAGCAGCTGCGCCTCGGGGCTTTCGAACGGGTAACGCATCAAGATGAAGGCGTCTGCCAA 1868159 Query 62774 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62833 ||||| || || || || || || || || | ||| || || | || ||||| || | Sbjct 1868160 GCCTTGGACTCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACCTCTCGGCTTCGGGGAC 1868219 Query 62834 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62893 || || || || || || || || || || || ||| | || ||||||||| |||| Sbjct 1868220 CGGGTAGTAGTTGATTTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACAGA 1868279 Query 62894 CTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACAGA 62950 |||||| || ||| | || ||| | || ||||||| | || | || Sbjct 1868280 TGCCAGTTTTTTGAAGTCATAAGTCCGCTCTGGCGTGACGTACATGTTGAGAGCGATGGA 1868339 Query 62951 TGCCAGATTACACACGGCTACCTCAT-TAGCATCCGCATATTGTATTATCTCAGTGCAAA 63009 ||||||||||| || || ||||| | | | | | || | | | ||| ||||| | Sbjct 1868340 GGCCAGATTACAAACCGCCACCTCGTCTTGGCTG-GTGTACTCCACGACCTCCGTGCACA 1868398 Query 63010 GATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 63069 | || || |||||||| || || | || || ||||| ||||| |||| ||||| || | Sbjct 1868399 GGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTCTT 1868458 Query 63070 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CG 63128 | || || ||| | || || || ||||| |||| || || || || || | ||| | | Sbjct 1868459 TGTAGAGCATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGGCGTACCAAAGCT 1868518 Query 63129 ACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGT 63188 || ||||||| | | || |||| || | |||||| || || || | | Sbjct 1868519 GCT-GAGCCTTCACCACCCGCTTCACCCTCCCCTCCTTCTCGTATGTCGTGTA-AAGCTT 1868576 Query 63189 -TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 || ||||| || ||||| | ||| | | ||||| || || |||||||||| || Sbjct 1868577 CTCAAACTCCTCCCCCCAGCACTCGTCGAGCCCGGGACACTCGTCGGGACACATCAGAGA 1868636 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||| ||| || || |||||| ||||| || || || || ||||| || || || Sbjct 1868637 CCAGTCTTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCGTAGAA 1868696 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 || || || | ||| || ||||| ||||| || ||||| || || || ||||| | | Sbjct 1868697 GAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTGTTCTTCTTCAGCTCCAGGAATTCAAA 1868756 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 | || | |||||||| |||| ||| || || | |||| |||| |||||| || || Sbjct 1868757 CACGTCGAAGTGCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTGTTGCCGCC 1868816 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 ||| || | ||| | ||| ||||| || |||||||||| ||| || | | ||||| || Sbjct 1868817 CTGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAACCCGTTCGA 1868876 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547 | || ||||| |||| ||| |||| || | || | || || | | | || Sbjct 1868877 GTTCCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGCTCTGATGCAGCTGACCGCGACGCC 1868936 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 || || || || ||| || || | ||||| | || | ||||| || ||||| || Sbjct 1868937 GATGCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAAATGCCCTC 1868996 Query 63608 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCC 63667 ||||| || || ||||| || || || ||||| |||| || | || | || || Sbjct 1868997 GATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCGGTTGGTCCC 1869056 Query 63668 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63727 || || || | ||| || || ||||| || ||||| || || || || || |||||||| Sbjct 1869057 GGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGT 1869116 Query 63728 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63787 ||| || || | ||| || ||| || || || || | || | ||| | |||||| Sbjct 1869117 CTCGATGGCCGCGTCGATGTCCGTCCCGTGGATCCCAACCGACACCCTCATGAGCATGTG 1869176 Query 63788 CTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63847 ||| || | || | | ||| ||| | ||| || ||||| |||| ||| || Sbjct 1869177 CTGCGGGCGCTCGGCCACCTTGCCGTTGACCCTCAGCAGATAGGAGCGCTCCAGAGTCTT 1869236 Query 63848 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATC 63907 || ||||| ||||||| || || ||||| ||||| || || |||| ||||| || Sbjct 1869237 GAACCCAAAGAAGTTGTAGGAGAAATCTCGGTCGTAGATTATGGCCGAGTTGAGGCGGTC 1869296 Query 63908 CTTATATTTGTTAACTATATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATT 63967 ||| | | || || || | || | | | || || || || || | || Sbjct 1869297 CTTGTTCTCCAGGACGATGTCGAGCGTCTTCTTGGCGATCATGGGCGAGTGGCGCTTGTT 1869356 Query 63968 TTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTC 64027 ||| || ||||||||| | | || |||||||| || || || | ||| || || || Sbjct 1869357 CAGAGGGTTGACATAGTTGTACAGGTCTTCCATCACGTCGCTGAACATTTTCTTGGTCTC 1869416 Query 64028 CTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGT 64087 |||||| || ||||| | ||| || || ||||| || ||||| || || || |||| || Sbjct 1869417 CTTGTGCAGGTTTGAGACGGCGATCCTTGCGGCGAGGATGGCGTAGTCGGGGTGTTTGGT 1869476 Query 64088 AGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATT 64147 || ||||| || || ||||| ||||| ||||| | || ||||| || || || | Sbjct 1869477 CGTCAGCGTGGCGGCGATCTCGGCCGCCAGCGTGTCGAGCTCCACCGTGGTGACACCGCT 1869536 Query 64148 ATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAA 64207 || | || || || |||||||| | || | | || || | | ||| | ||| | Sbjct 1869537 GTACAAACCCTGGATCACCTTCATGGTGATCTGAGCCGGGTCCACAAAATCAGAGTTCAG 1869596 Query 64208 GCCATAGCACAATTTTCT-AATACGAGACGTGATTTTATCAAACATGAC 64255 || ||||| || |||| || || || ||||||||||| |||||||| Sbjct 1869597 GCTGTAGCA-AAGCTTCTGGATGCGCGAGGTGATTTTATCGAACATGAC 1869644 >seq478 Length=201109 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || |||||||| ||||| | ||| | Sbjct 176178 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 176119 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| |||||| || || || ||||||||||| || || ||||| |||| Sbjct 176118 TCAGCCAGAAGATGGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 176059 Query 33724 C 33724 | Sbjct 176058 C 176058 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || |||||||| ||||| | ||| | Sbjct 188368 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 188427 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || ||||| ||||| || || || ||||||||||| || || ||||| |||| Sbjct 188428 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 188487 Query 33724 C 33724 | Sbjct 188488 C 188488 >seq332 Length=374033 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 62628 TATGTATCATATGGTCCTTCCTTCT-CAGCTAGTTTACAACTCGCCTCTAATGCACCGTA 62686 || || ||||| ||| | ||||| |||| || | ||| || ||||| | ||| |||| Sbjct 70363 TAGGTTTCATA-GGTGCCGACTTCTGCAGCCAGCTCACAGCTGGCCTCCAGAGCAGCGTA 70421 Query 62687 ATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATA 62746 || ||||| |||||||||| | || || || ||||||||||| ||||||||||| Sbjct 70422 GTAGATGGTCTCAAAGATCTGAATGTTGAGCAACTGGGCTTCCGGGCTTTCAAATGGATA 70481 Query 62747 ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62806 | | || ||||| || || || | || || || || || || || || | || | Sbjct 70482 ACGCATCAGGATAAAAGCATCAGCCAGACCCTGGACGCCGATTCCAATTGGCCGGTGGCG 70541 Query 62807 CTTATTAGAGATTTCAGCTTC 62827 ||| ||||| ||||||| || Sbjct 70542 CTTGTTAGACCTTTCAGCCTC 70562 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || || || || | || || || ||||| || ||||| || || || || | |||| Sbjct 72332 GTGCCTGCGTTGAACAGTGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAAATTG 72391 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || ||||||||||||| || || || | || |||||| || |||| || | ||| | | Sbjct 72392 TAGGTCTCAATAGCTGCATCAATGTCTCTTTTATGAATCCCGACTGACACTCTCATCAGC 72451 Query 63783 ATGTGCTGAGGTCTTTCAACAA 63804 |||||||| ||||| ||| ||| Sbjct 72452 ATGTGCTGGGGTCTCTCAGCAA 72473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629793407131440