Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 6e-12 seq478 84.2 2e-11 >seq3 Length=10095097 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || || || || || |||||||| || | || | |||||||| | |||| || ||| Sbjct 6543098 TCATCCCTGCTAATCAGTTCATTGGAGTACGTCAGGCCGGGCATGAGGCCTCTCTTCTTT 6543039 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||| | || |||||||| || || || ||||| || ||||||||||||||||| || Sbjct 6543038 AGCCAATAGATGGCAGCAAAAGAGCCCGAGAAGAAGATGCCCTCCACAGCTGCAAAAGCC 6542979 Query 11774 AC 11775 || Sbjct 6542978 AC 6542977 >seq478 Length=201109 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || | |||||||||| |||| || || Sbjct 176176 TCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCTTC 176117 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || ||||| || |||||||| ||||| |||||||||||||| || || || Sbjct 176116 AGCCAGAAGATGGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGGCC 176057 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 176056 ACCACACGCTCTCC 176043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468506802791120