Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq80 450 2e-121 seq332 93.3 6e-14 >seq80 Length=2229659 Score = 450 bits (498), Expect = 2e-121 Identities = 1285/1969 (65%), Gaps = 11/1969 (1%) Strand=Plus/Plus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 |||||||||||| | || || | | | ||||| ||||| || |||| | || Sbjct 1867680 CTGAATGGATCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGCTCCACAGCCCCCT 1867739 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 ||| || | || | || || || || || || | || || || || || | || || Sbjct 1867740 CTCCGTCATGTCTTTCAGCAGGTGGGGGTTGACGATCTGGAACTCCCCGGAGAGGACCCT 1867799 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || ||||| || || ||||| || | || | ||||| || || |||| || || || Sbjct 1867800 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 1867859 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 ||| || || || ||||| || |||| || | || || || | |||| | | ||| Sbjct 1867860 AGTGGACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 1867919 Query 65327 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 65386 || || || || | | ||| | ||| || |||| |||| Sbjct 1867920 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTCGGTGTCTTGCTCCACATGTCGTA 1867979 Query 65387 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 65446 || || | || | ||| || || ||| | || || ||||| || || || | Sbjct 1867980 CTGCAGGACGCCCCTGCTGACGGGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCGGC 1868039 Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506 || || || || |||||||| | || |||| || ||||| || || |||| | || Sbjct 1868040 GGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTT 1868099 Query 65507 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 65566 || || || || |||| || || || ||| | | || || |||||||| || Sbjct 1868100 GAGCAGCTGCGCCTCGGGGCTTTCGAACGGGTAACGCATCAAGATGAAGGCGTCTGCCAA 1868159 Query 65567 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 65626 ||||| || || || || || || || || | ||| || || | || ||||| || | Sbjct 1868160 GCCTTGGACTCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACCTCTCGGCTTCGGGGAC 1868219 Query 65627 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 65686 || || || || || || || || || || || ||| | || ||||||||| |||| Sbjct 1868220 CGGGTAGTAGTTGATTTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACAGA 1868279 Query 65687 CTTCAGTTTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACAGA 65743 |||||| || ||| | ||||| | || ||||||| | || | || Sbjct 1868280 TGCCAGTTTTTTGAAGTCATAAGTCCGCTCTGGCGTGACGTACATGTTGAGAGCGATGGA 1868339 Query 65744 TGCCAGATTACAAACGGCTACCTCAT-TAGCATCCGCATATTGTATTATCTCAGTGCAAA 65802 |||||||||||||| || ||||| | | | | | || | | | ||| ||||| | Sbjct 1868340 GGCCAGATTACAAACCGCCACCTCGTCTTGGCTG-GTGTACTCCACGACCTCCGTGCACA 1868398 Query 65803 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 65862 | || || ||||||||||| || | || || ||||| ||||| |||| ||||| || | Sbjct 1868399 GGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTCTT 1868458 Query 65863 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CG 65921 | || || ||| | || || || ||||| |||| || || || || || | ||| | | Sbjct 1868459 TGTAGAGCATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGGCGTACCAAAGCT 1868518 Query 65922 ACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGT 65981 || ||||||| | | || ||| || | |||||| || || || | | Sbjct 1868519 GCT-GAGCCTTCACCACCCGCTTCACCCTCCCCTCCTTCTCGTATGTCGTGTA-AAGCTT 1868576 Query 65982 -TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 || ||||| || ||||| | ||| | || ||||| || || |||||||||| || Sbjct 1868577 CTCAAACTCCTCCCCCCAGCACTCGTCGAGCCCGGGACACTCGTCGGGACACATCAGAGA 1868636 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| ||| || || |||||| ||||| || || || || ||||| || || || Sbjct 1868637 CCAGTCTTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCGTAGAA 1868696 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 | || |||| ||| || ||||| ||||| || ||||| || || || ||||| | | Sbjct 1868697 GAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTGTTCTTCTTCAGCTCCAGGAATTCAAA 1868756 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 | || | |||||||| |||| ||| || || | |||| |||| |||||| || || Sbjct 1868757 CACGTCGAAGTGCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTGTTGCCGCC 1868816 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||| || | ||| | ||| ||||| || |||||||||| ||| || | | || || || Sbjct 1868817 CTGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAACCCGTTCGA 1868876 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACC 66340 | || ||||| |||| ||| ||||| || |||| | || || | | | || Sbjct 1868877 GTTCCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGCTCTGATGCAGCTGACCGCGACGCC 1868936 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 || || || || ||| || || | ||||| | || | || || || |||||||| Sbjct 1868937 GATGCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAAATGCCCTC 1868996 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 66460 || || || || ||||| || || || ||||| |||| || | || | || || Sbjct 1868997 GATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCGGTTGGTCCC 1869056 Query 66461 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 66520 || || || | ||| || || ||||| || ||||| || || || || || |||||||| Sbjct 1869057 GGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGT 1869116 Query 66521 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 66580 ||| || || | ||| || ||| || || || || | || | ||| | |||||| Sbjct 1869117 CTCGATGGCCGCGTCGATGTCCGTCCCGTGGATCCCAACCGACACCCTCATGAGCATGTG 1869176 Query 66581 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 66640 ||| || | || | | |||| ||| | ||| || ||||| |||| ||| || Sbjct 1869177 CTGCGGGCGCTCGGCCACCTTGCCGTTGACCCTCAGCAGATAGGAGCGCTCCAGAGTCTT 1869236 Query 66641 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 66700 || ||||| ||||||| || || ||||| ||||| || || |||||||||| || Sbjct 1869237 GAACCCAAAGAAGTTGTAGGAGAAATCTCGGTCGTAGATTATGGCCGAGTTGAGGCGGTC 1869296 Query 66701 CTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATT 66760 ||| | | || | || | || | | | || || || || || | || Sbjct 1869297 CTTGTTCTCCAGGACGATGTCGAGCGTCTTCTTGGCGATCATGGGCGAGTGGCGCTTGTT 1869356 Query 66761 TTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTC 66820 ||| |||||||||||| | | || |||||||| || || || | ||| || || || Sbjct 1869357 CAGAGGGTTGACATAGTTGTACAGGTCTTCCATCACGTCGCTGAACATTTTCTTGGTCTC 1869416 Query 66821 TTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGT 66880 ||||| || ||||| ||||| || || ||||| | ||||| || || || |||| || Sbjct 1869417 CTTGTGCAGGTTTGAGACGGCGATCCTTGCGGCGAGGATGGCGTAGTCGGGGTGTTTGGT 1869476 Query 66881 AGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATT 66940 || ||||| || || ||||| ||||| ||||| | || ||||| || || || | Sbjct 1869477 CGTCAGCGTGGCGGCGATCTCGGCCGCCAGCGTGTCGAGCTCCACCGTGGTGACACCGCT 1869536 Query 66941 ATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAA 67000 || | || ||||| |||||||| | || | | || || | | ||||| ||| | Sbjct 1869537 GTACAAACCCTGGATCACCTTCATGGTGATCTGAGCCGGGTCCACAAAATCAGAGTTCAG 1869596 Query 67001 GCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGAC 67048 || || || || |||| || || || ||||||||||| |||||||| Sbjct 1869597 GCTGTAGCA-AAGCTTCTGGATGCGCGAGGTGATTTTATCGAACATGAC 1869644 >seq332 Length=374033 Score = 93.3 bits (102), Expect = 6e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 66801 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATG 66860 || |||| ||| || || |||||||| || || || ||||| || | ||| || | ||| Sbjct 73033 CTGAATACTTTCTTGGTCTCTTTGTGCAGGTTGGACACGGCGATCCGAGCAGCCAGGATG 73092 Query 66861 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 66920 || || || ||||||| || || ||||| || | || || ||||||||||||| Sbjct 73093 GCGTAGTCTGGATGTTTGGTGGTGAGGGTGGCAGCGGTCTCTGCAGCCAGAGTGTCCAGC 73152 Query 66921 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || || || || |||||| | || | || ||||| |||||||| Sbjct 73153 TCCACGGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 73196 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || || || || | || || || ||||| || ||||| || || || || | |||| Sbjct 72332 GTGCCTGCGTTGAACAGTGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAAATTG 72391 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || ||||||||||||| || || || | || |||||| || |||| || | ||| | | Sbjct 72392 TAGGTCTCAATAGCTGCATCAATGTCTCTTTTATGAATCCCGACTGACACTCTCATCAGC 72451 Query 66576 ATGTGCTGAGGTCTTTCA 66593 |||||||| ||||| ||| Sbjct 72452 ATGTGCTGGGGTCTCTCA 72469 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/181 (71%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 65441 CTTCT-CAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCT 65499 ||||| |||| || ||||| || ||||| | ||| |||| || ||||| || ||||||| Sbjct 70382 CTTCTGCAGCCAGCTCACAGCTGGCCTCCAGAGCAGCGTAGTAGATGGTCTCAAAGATCT 70441 Query 65500 TCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGT 65559 | || || || |||||| |||| |||||||||||| | || ||||| || | Sbjct 70442 GAATGTTGAGCAACTGGGCTTCCGGGCTTTCAAATGGATAACGCATCAGGATAAAAGCAT 70501 Query 65560 CTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTT 65619 | || | || || || || || || || || | || | ||| ||||| ||||||| | Sbjct 70502 CAGCCAGACCCTGGACGCCGATTCCAATTGGCCGGTGGCGCTTGTTAGACCTTTCAGCCT 70561 Query 65620 C 65620 | Sbjct 70562 C 70562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658147517937320