Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq23 87.8 2e-12 >seq23 Length=4589928 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || || ||||| || ||||| || ||| || |||| Sbjct 3279569 ACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 3279510 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || || ||| ||||||| | ||||| || || || |||||||| || Sbjct 3279509 ATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTT 3279450 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | ||||| ||||||||||||||| ||| | Sbjct 3279449 GTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGAT 3279390 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | || || || || || ||||| Sbjct 3279389 GGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 3279354 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || ||||| | | ||||| || | ||||| || ||||| || || ||||| || || Sbjct 3277391 TGCCCGCCCCTGAGACGCAGGACCAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCA 3277332 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| ||||| ||||| || |||||| ||||||| | ||||| || || Sbjct 3277331 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 3277272 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| || || | | || | ||||| |||||||| Sbjct 3277271 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCC 3277212 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||| || || | || || || || || ||||| Sbjct 3277211 ACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 3277162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496044944941600