Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq80 462 3e-125 seq478 102 1e-16 seq332 89.7 7e-13 >seq80 Length=2229659 Score = 462 bits (512), Expect = 3e-125 Identities = 1295/1971 (66%), Gaps = 15/1971 (1%) Strand=Plus/Plus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 |||||||||||| | || || | | | ||||| ||||| || |||| | || Sbjct 1867680 CTGAATGGATCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGCTCCACAGCCCCCT 1867739 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 ||| || | || | || || || || || || | || || || || || | || || Sbjct 1867740 CTCCGTCATGTCTTTCAGCAGGTGGGGGTTGACGATCTGGAACTCCCCGGAGAGGACCCT 1867799 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || ||||| || | || | || || || || |||| || || || Sbjct 1867800 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 1867859 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 ||| || ||||| ||||| || |||| || | || || || | |||| | ||| Sbjct 1867860 AGTGGACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 1867919 Query 79206 TTTATCTTTTAG-AGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCAT 79264 || || || || || |||| | ||||| || || | ||| |||| | || | Sbjct 1867920 CTTCTCCTTCAGCAGCTTCC-AGTCCCACAGGTCCGTCGGTGTCTTGCTCCACATGTCGT 1867978 Query 79265 ATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTT 79324 | || || | || | || || || ||| ||| || || || || || || Sbjct 1867979 ACTGCAGGACGCCCCTGCTGACGGGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCGG 1868038 Query 79325 CGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTAT 79384 |||| | || || |||||||| | || |||| || ||||| || || |||| | | Sbjct 1868039 CGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAACATCTGGATGT 1868098 Query 79385 TGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 79444 |||| || || || |||| || || || ||| | | || || |||||||| | Sbjct 1868099 TGAGCAGCTGCGCCTCGGGGCTTTCGAACGGGTAACGCATCAAGATGAAGGCGTCTGCCA 1868158 Query 79445 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAA 79504 | ||||| || || || || || || || || | ||| || || | || ||||| || | Sbjct 1868159 AGCCTTGGACTCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACCTCTCGGCTTCGGGGA 1868218 Query 79505 TAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACAT 79564 || || || || || || || || || || || || | || ||||||||| |||| Sbjct 1868219 CCGGGTAGTAGTTGATTTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACAG 1868278 Query 79565 CCTTTAGTTTGAGAAAATCAAATCGTCCA-TCTA---TTACAAACATGTTCAACGCGACA 79620 ||||| || ||| | |||| ||| | || ||||||| | |||| Sbjct 1868279 ATGCCAGTTTTTTGAAGTCATAA-GTCCGCTCTGGCGTGACGTACATGTTGAGAGCGATG 1868337 Query 79621 GATGCCAGATTACAAACGGCTACCTCAT-TAGCATCCGCATATTGTATTATTTCAGTGCA 79679 || |||||||||||||| || ||||| | | | | | || | | | || ||||| Sbjct 1868338 GAGGCCAGATTACAAACCGCCACCTCGTCTTGGCTG-GTGTACTCCACGACCTCCGTGCA 1868396 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 ||||| || ||||| ||||| || | || || ||||| ||||| |||| ||||| || Sbjct 1868397 CAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTC 1868456 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 79798 || || || ||| |||| || || ||||| |||| || || || || || | ||| | Sbjct 1868457 TTTGTAGAGCATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGGCGTACCAAAG 1868516 Query 79799 CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATC 79858 | || ||||||| | | ||| ||| || | |||||| || || || | Sbjct 1868517 CTGCT-GAGCCTTCACCACCCGCTTCACCCTCCCCTCCTTCTCGTATGTCGTGTA-AAGC 1868574 Query 79859 GT-TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAAC 79917 | || ||||| || ||||| ||||| | || ||||| ||||| |||||||||| Sbjct 1868575 TTCTCAAACTCCTCCCCCCAGCACTCGTCGAGCCCGGGACACTCGTCGGGACACATCAGA 1868634 Query 79918 GACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 79977 ||||| ||| | || ||||| ||||| || || || || ||||| || || Sbjct 1868635 GACCAGTCTTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCGTAG 1868694 Query 79978 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 80037 || || || |||| ||| |||||||| ||||| || ||||| || || || ||||| | Sbjct 1868695 AAGAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTGTTCTTCTTCAGCTCCAGGAATTCA 1868754 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097 | | || | |||||||| |||| ||| || || | |||| || | |||||| || Sbjct 1868755 AACACGTCGAAGTGCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTGTTGCCG 1868814 Query 80098 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 80157 ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | || || Sbjct 1868815 CCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAACCCGTTC 1868874 Query 80158 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 80217 || | || ||||| |||| ||| ||||| || | || | || || | | | Sbjct 1868875 GAGTTCCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGCTCTGATGCAGCTGACCGCGACG 1868934 Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || || || || || ||| || || | ||||| | || | || || || |||||| Sbjct 1868935 CCGATGCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAAATGCCC 1868994 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337 || ||||| || || ||||| || || || ||||| |||| || | || | || Sbjct 1868995 TCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCGGTTGGTC 1869054 Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 80397 || || || || | ||| || || ||||| || ||||| || || ||||| || |||||| Sbjct 1869055 CCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAC 1869114 Query 80398 GTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 ||||| || || | || || ||| || || || |||| || | ||| | |||| Sbjct 1869115 GTCTCGATGGCCGCGTCGATGTCCGTCCCGTGGATCCCAACCGACACCCTCATGAGCATG 1869174 Query 80458 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTT 80517 ||||| || | || | | |||| || | ||| || || || |||| ||| Sbjct 1869175 TGCTGCGGGCGCTCGGCCACCTTGCCGTTGACCCTCAGCAGATAGGAGCGCTCCAGAGTC 1869234 Query 80518 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 80577 || || ||||| ||||||| || || ||||| ||||| || || |||||||||| Sbjct 1869235 TTGAACCCAAAGAAGTTGTAGGAGAAATCTCGGTCGTAGATTATGGCCGAGTTGAGGCGG 1869294 Query 80578 TCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCA 80637 ||||| | | || | || | || | | | || || || || || | Sbjct 1869295 TCCTTGTTCTCCAGGACGATGTCGAGCGTCTTCTTGGCGATCATGGGCGAGTGGCGCTTG 1869354 Query 80638 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 80697 || ||| || ||||||||| | | || |||||||| || || || | ||| || || Sbjct 1869355 TTCAGAGGGTTGACATAGTTGTACAGGTCTTCCATCACGTCGCTGAACATTTTCTTGGTC 1869414 Query 80698 TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGT 80757 |||||||| || ||||| ||||| || || ||||| | ||||| || || || |||| Sbjct 1869415 TCCTTGTGCAGGTTTGAGACGGCGATCCTTGCGGCGAGGATGGCGTAGTCGGGGTGTTTG 1869474 Query 80758 GTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 80817 || || ||||| || || ||||| ||||| ||||| | || ||||| || || || Sbjct 1869475 GTCGTCAGCGTGGCGGCGATCTCGGCCGCCAGCGTGTCGAGCTCCACCGTGGTGACACCG 1869534 Query 80818 TTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTT 80877 | || | || ||||| |||||||| | || | | || || | | ||||| ||| Sbjct 1869535 CTGTACAAACCCTGGATCACCTTCATGGTGATCTGAGCCGGGTCCACAAAATCAGAGTTC 1869594 Query 80878 AAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATGAC 80927 | || || || || |||| || || || ||||||||||| |||||||| Sbjct 1869595 AGGCTGTAGCA-AAGCTTCTGGATGCGCGAGGTGATTTTATCGAACATGAC 1869644 >seq478 Length=201109 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||| || || || |||||||| ||||| | ||| | Sbjct 188368 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 188427 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || ||||| || || || ||||| ||||||||||| || || || || |||| Sbjct 188428 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 188487 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 188488 CCACCACACGCTCTCC 188503 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||| || || || |||||||| ||||| | ||| | Sbjct 176178 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 176119 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || ||||| ||||||||||| || || || || |||| Sbjct 176118 TCAGCCAGAAGATGGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 176059 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 176058 CCACCACACGCTCTCC 176043 >seq332 Length=374033 Score = 89.7 bits (98), Expect = 7e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 80680 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATG 80739 || |||| ||| || || || ||||| || || || ||||| || | || || | ||| Sbjct 73033 CTGAATACTTTCTTGGTCTCTTTGTGCAGGTTGGACACGGCGATCCGAGCAGCCAGGATG 73092 Query 80740 GCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 80799 || || |||||||||| || || ||||| || | || || ||||||||||||| Sbjct 73093 GCGTAGTCTGGATGTTTGGTGGTGAGGGTGGCAGCGGTCTCTGCAGCCAGAGTGTCCAGC 73152 Query 80800 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || || || || |||||| | || | || ||||| |||||||| Sbjct 73153 TCCACGGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 73196 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || || || || | || || || ||||| || ||||| || || ||||| | |||| Sbjct 72332 GTGCCTGCGTTGAACAGTGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAAATTG 72391 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || ||||||||||||| || || || | || |||||| || || | || | ||| | | Sbjct 72392 TAGGTCTCAATAGCTGCATCAATGTCTCTTTTATGAATCCCGACTGACACTCTCATCAGC 72451 Query 80455 ATGTGCTGAGGTCTTTCA 80472 |||||||| ||||| ||| Sbjct 72452 ATGTGCTGGGGTCTCTCA 72469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718241209499720