Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq80 428 6e-115 seq332 98.7 1e-15 seq478 84.2 3e-11 >seq80 Length=2229659 Score = 428 bits (474), Expect = 6e-115 Identities = 1080/1628 (66%), Gaps = 13/1628 (1%) Strand=Plus/Plus Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| || || || |||||||| | || | || || ||||| || || |||| | | Sbjct 1868039 CGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAACATCTGGATGT 1868098 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 |||| || || || ||||| || || || ||| | | || || |||||||| | Sbjct 1868099 TGAGCAGCTGCGCCTCGGGGCTTTCGAACGGGTAACGCATCAAGATGAAGGCGTCTGCCA 1868158 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 | ||||| || || || || || || ||||| | ||| || || | || ||||| || | Sbjct 1868159 AGCCTTGGACTCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACCTCTCGGCTTCGGGGA 1868218 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 || || || || || || || || || || || ||| | || ||||||||| |||| Sbjct 1868219 CCGGGTAGTAGTTGATTTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACAG 1868278 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAG 71704 ||||| || ||| | ||| ||| | || ||| ||| | || | | Sbjct 1868279 ATGCCAGTTTTTTGAAGTCATAAGTCCGCTCTGGCGTGACGTACATGTTGAGAGCGATGG 1868338 Query 71705 ATGCCAGATTACAAACGGCTACCTCAT-TAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 | |||||||||||||| || ||||| | | | | || || | | | || ||||| Sbjct 1868339 AGGCCAGATTACAAACCGCCACCTCGTCTTGGCT-GGTGTACTCCACGACCTCCGTGCAC 1868397 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 || || || ||||||||||| || | || || ||||| ||||| |||| ||||| || Sbjct 1868398 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTCT 1868457 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-C 71882 || || || || |||| || || ||||| |||| || || || || || | ||| | | Sbjct 1868458 TTGTAGAGCATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGGCGTACCAAAGC 1868517 Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCG 71942 || ||||||| | | ||| ||| || | |||||| || || || | Sbjct 1868518 TGCT-GAGCCTTCACCACCCGCTTCACCCTCCCCTCCTTCTCGTATGTCGTGTA-AAGCT 1868575 Query 71943 T-TCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAAT 72000 | || ||||| || ||||| ||| | ||| | || ||||| || | |||||||||| Sbjct 1868576 TCTCAAACTCCTCCCCCCA-GCACTCGTCGAGCCCGGGACACTCGTCGGGACACATCAGA 1868634 Query 72001 GACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 72060 ||||| ||| | | ||||| ||||| || || || || ||||| || || Sbjct 1868635 GACCAGTCTTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCGTAG 1868694 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 || || || |||| ||| |||||||| ||||| || ||||| || || || ||||| | Sbjct 1868695 AAGAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTGTTCTTCTTCAGCTCCAGGAATTCA 1868754 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | | || | |||||||| |||| ||| || || | |||| |||| |||||| || Sbjct 1868755 AACACGTCGAAGTGCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTGTTGCCG 1868814 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | || || Sbjct 1868815 CCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAACCCGTTC 1868874 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGA 72300 || || ||||| |||| ||| ||||| || | || | || ||| | | | Sbjct 1868875 GAGTTCCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGCTCTGATGCAGCTGACCGCGACG 1868934 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || || || || || ||| || || | ||||| | || | || || || |||||| Sbjct 1868935 CCGATGCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAAATGCCC 1868994 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 || || || || || ||||| || || || ||||| |||| || | || | || Sbjct 1868995 TCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCGGTTGGTC 1869054 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || || || || | ||| || || ||||| || ||||| || || ||||| || |||||| Sbjct 1869055 CCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAC 1869114 Query 72481 GTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 ||||| || || | || || ||| || || || |||| || | ||| | ||| Sbjct 1869115 GTCTCGATGGCCGCGTCGATGTCCGTCCCGTGGATCCCAACCGACACCCTCATGAGCATG 1869174 Query 72541 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 72600 ||||| || | || | | |||| || | ||| || ||||| |||| ||| Sbjct 1869175 TGCTGCGGGCGCTCGGCCACCTTGCCGTTGACCCTCAGCAGATAGGAGCGCTCCAGAGTC 1869234 Query 72601 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTA 72660 || || ||||| ||||||| || || ||||| ||||| || || |||| ||||| Sbjct 1869235 TTGAACCCAAAGAAGTTGTAGGAGAAATCTCGGTCGTAGATTATGGCCGAGTTGAGGCGG 1869294 Query 72661 TCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCA 72720 ||||| | | || || || | || | | | || || || || || | Sbjct 1869295 TCCTTGTTCTCCAGGACGATGTCGAGCGTCTTCTTGGCGATCATGGGCGAGTGGCGCTTG 1869354 Query 72721 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 72780 || ||| || ||||||||| | | || |||||||| || || || | ||| || || Sbjct 1869355 TTCAGAGGGTTGACATAGTTGTACAGGTCTTCCATCACGTCGCTGAACATTTTCTTGGTC 1869414 Query 72781 TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGT 72840 |||||||| || ||||| ||||| || || ||||| || ||||| || || || |||| Sbjct 1869415 TCCTTGTGCAGGTTTGAGACGGCGATCCTTGCGGCGAGGATGGCGTAGTCGGGGTGTTTG 1869474 Query 72841 GTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 72900 || || ||||| || || || || ||||| ||||| | || ||||| || || || Sbjct 1869475 GTCGTCAGCGTGGCGGCGATCTCGGCCGCCAGCGTGTCGAGCTCCACCGTGGTGACACCG 1869534 Query 72901 TTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTT 72960 | || | || ||||| |||||||| | || | | || || | | ||||| ||| Sbjct 1869535 CTGTACAAACCCTGGATCACCTTCATGGTGATCTGAGCCGGGTCCACAAAATCAGAGTTC 1869594 Query 72961 AAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATAACATTTTCCCG 73019 | || || || || |||| || || || ||||||||||| ||||| || ||| | Sbjct 1869595 AGGCTGTAGCA-AAGCTTCTGGATGCGCGAGGTGATTTTATCGAACATGACGCGCTCCTG 1869653 Query 73020 GCATCCAT 73027 || ||||| Sbjct 1869654 GCGTCCAT 1869661 >seq332 Length=374033 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 72763 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 72822 || |||| ||| || || || ||||| || || || ||||| || | || || || ||| Sbjct 73033 CTGAATACTTTCTTGGTCTCTTTGTGCAGGTTGGACACGGCGATCCGAGCAGCCAGGATG 73092 Query 72823 GCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAAT 72882 || || |||||||||| || || ||||| || | ||||| ||||||||||||| Sbjct 73093 GCGTAGTCTGGATGTTTGGTGGTGAGGGTGGCAGCGGTCTCTGCAGCCAGAGTGTCCAGC 73152 Query 72883 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || |||||| | || | || ||||| |||||||| Sbjct 73153 TCCACGGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 73196 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 71402 CTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCT 71461 ||| | | || || ||||| || ||||| | || | || || ||||| || || |||| Sbjct 70382 CTTCTGCAGCCAGCTCACAGCTGGCCTCCAGAGCAGCGTAGTAGATGGTCTCAAAGATCT 70441 Query 71462 TCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGT 71521 | ||||| || ||||||||||| |||||||||||| | || ||||| || | Sbjct 70442 GAATGTTGAGCAACTGGGCTTCCGGGCTTTCAAATGGATAACGCATCAGGATAAAAGCAT 70501 Query 71522 CTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTT 71581 | || | || || ||||| || || || || | ||| | ||| ||||| ||||||| | Sbjct 70502 CAGCCAGACCCTGGACGCCGATTCCAATTGGCCGGTGGCGCTTGTTAGACCTTTCAGCCT 70561 Query 71582 C 71582 | Sbjct 70562 C 70562 >seq478 Length=201109 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||| || || || |||||||| ||||| | ||| | Sbjct 188368 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 188427 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || || || || ||||| ||||||||||| || || || || |||| Sbjct 188428 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 188487 Query 42207 C 42207 | Sbjct 188488 C 188488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671113419865480