Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq80 170 3e-37 seq3 102 1e-16 seq332 93.3 6e-14 >seq80 Length=2229659 Score = 170 bits (188), Expect = 3e-37 Identities = 382/565 (68%), Gaps = 28/565 (5%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||| ||| | | || | || || ||||| ||| | ||||| || || | || Sbjct 1868888 ACCAACGGGAACTCGAACGGGTTGGTCCCCATGCTGAGAGTTTACAACAACACTG-CTCG 1868830 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| ||||||||||| ||| |||| || || | || | ||| |||| || || Sbjct 1868829 CTACGTTGACCAGGGCGGCAACAAAAGGCCCGGAGCCTTCGCGATGTACCTGGAGCCGTG 1868770 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||| ||||| ||||| || | ||| || || ||| | || || ||| | Sbjct 1868769 GCACTTCGACGTGTTTGAATTCCTGGAGCTGAAGAAGAACACGGGAAAAGAGGAGCAGAG 1868710 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------ 97039 |||||||||| | || || || || ||| | || || ||||||||||||| || Sbjct 1868709 AGCCAGGGACCTCTTCTACGCCCTGTGGATCCCCGACCTGTTCATGAAGCGAGTGGAGAG 1868650 Query 97040 CAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTG 97099 |||| | | ||||| || ||||| |||||| || ||||| || ||| || Sbjct 1868649 CAACCAAG------ACTGGTCTCTGATGTGTCCCGACGAGTGTCCCGGGCTCGACGAGTG 1868596 Query 97100 CTGGGGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCGATACGT 97156 |||||| || ||||||||| ||| |||||| | |||||| | ||||| || || Sbjct 1868595 CTGGGGGGAGGAGTTTGAG---AAGCTTTACACGACATACGAGAAGGAGGG--GA-GGGT 1868542 Query 97157 GAGACGAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGAC 97213 || || || | | || | | || ||| | |||||| | | | ||| || || Sbjct 1868541 GAAGCGGGTGGTGAAGGCTCAGCAGCTTTGGTACGCCATCATCGAGTCGCAGACGGAAAC 1868482 Query 97214 TGGAACTCCGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACT 97272 ||||| |||||||| |||||||| || |||| || | || ||||| || | || Sbjct 1868481 CGGAACGCCGTACATGCTCTACAAAGA-CGCGTGCAACAGGAAGAGCAATCAGCAGAACC 1868423 Query 97273 TGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACG 97332 |||||||||||||| || ||| ||||||||||| | || |||||| || | |||| Sbjct 1868422 TGGGCACCATCAAGTGCAGCAACCTGTGCACGGAGGTCGTGGAGTACACCAGCCAAGACG 1868363 Query 97333 AGACGGCAGTTTGCGTTCTGGCATC 97357 || ||| ||||| |||||| || Sbjct 1868362 AGGTGGCGGTTTGTAATCTGGCCTC 1868338 >seq3 Length=10095097 Score = 102 bits (112), Expect = 1e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 125425 GACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCT 125484 |||| ||||| || || || || |||||||||||||| ||||| |||||| ||||||| Sbjct 6542972 GACTTGTGGCTTTTGCAGCTGTGGAGGGCATCTTCTTCTCGGGCTCTTTTGCTGCCATCT 6543031 Query 125485 TTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 |||||| |||||| | || ||||||||||| |||||| || Sbjct 6543032 ATTGGCTAAAGAAGAGAGGCCTCATGCCCGGCCTGACGTAC 6543072 >seq332 Length=374033 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 |||||| | |||||| | | | ||| ||| || || || || ||||| ||||||||| Sbjct 71063 CTGTGGTACGCCATCATCGAGTCGCAGACAGAAACGGGGACACCATACATGCTCTACAAG 71004 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 || || || | || |||||||| | || ||||||||||||| | ||||||| Sbjct 71003 GACGCCTGCAACAGGAAGAGCAACCAGCAAAACCTGGGCACCATCAAATCCAGCAATCTG 70944 Query 97299 TGCACGGAAATTGTAGAGTAC 97319 ||||||||| ||||||||||| Sbjct 70943 TGCACGGAAGTTGTAGAGTAC 70923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741030734063480