Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq117 86.0 3e-12 seq66 84.2 1e-11 seq176 82.4 4e-11 seq158 82.4 4e-11 seq40 82.4 4e-11 seq36 82.4 4e-11 seq1 82.4 4e-11 >seq117 Length=1416622 Score = 86.0 bits (94), Expect = 3e-12 Identities = 80/99 (81%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 11431 ATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 ||||| || |||||||| || | | ||||| | |||||||||| ||||||| ||| Sbjct 1195576 ATATAAAA--AATAAAAA-TCTAGT-GGCCCGTACGGGGATCGAACCCGCGACCTTGGCG 1195631 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||| |||||||||||||| |||| Sbjct 1195632 TTATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 1195670 >seq66 Length=2490029 Score = 84.2 bits (92), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| || |||| || | || ||||| | |||||||||| ||||||| ||||||| Sbjct 879062 AGAAGAAAGAAAACATGACAT-GGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTAT 879004 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||| |||||||||||||| |||| Sbjct 879003 TAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 878969 >seq176 Length=926279 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 440226 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 440285 Query 11528 CC 11529 || Sbjct 440286 CC 440287 >seq158 Length=1023182 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 996889 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 996948 Query 11528 CC 11529 || Sbjct 996949 CC 996950 >seq40 Length=3616124 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 3608895 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3608836 Query 11528 CC 11529 || Sbjct 3608835 CC 3608834 >seq36 Length=3901359 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 41049 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 41108 Query 11528 CC 11529 || Sbjct 41109 CC 41110 >seq1 Length=11911191 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2858039 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2857980 Query 11528 CC 11529 || Sbjct 2857979 CC 2857978 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261481406582548