Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq54 174 2e-38 seq22 127 3e-24 seq10 122 1e-22 >seq54 Length=3035547 Score = 174 bits (192), Expect = 2e-38 Identities = 219/299 (73%), Gaps = 5/299 (2%) Strand=Plus/Minus Query 8681 AACGCGGCCAACGGACA----CCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGC 8736 || || |||| ||||| |||| | |||||| | ||||| || ||| | | || Sbjct 2624954 AATGCCGCCATTGGACAGGGTCCCTGT-ACGTTGTTGCAGACGAGCTTCTGCAGCGAGGC 2624896 Query 8737 ACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGG 8796 | |||||||| | || |||||| || |||||||||||||| |||||||| |||| Sbjct 2624895 GGTGTTGACGATGCTGAAACCCACGCTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCCGG 2624836 Query 8797 GGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAAT 8856 |||||||||| || |||| ||||| |||||||| || |||||||||| ||| | || Sbjct 2624835 GGAGCAGATGGGATTTCCCATTAGGCCCTTGAGGGAGAAAGGAGCCCCCATCTCCACCAT 2624776 Query 8857 GCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTC 8916 | |||| ||||||||||||||||| ||||| || ||||||| | |||| ||| | ||| Sbjct 2624775 GGTCTCCCCGAAGATGGCGTTGGGCCGGGGTTTCTCCACCAGCAGGCCGGGGTAGAGCTC 2624716 Query 8917 CACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||| || || | ||| |||| | || || ||||| ||||| || ||||||| Sbjct 2624715 CACTGCATCCACATCTTCGTACATCTCCTCCAGCAATGCAGCCATTTCTTTCTCTCCTG 2624657 Score = 134 bits (148), Expect = 2e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| || ||||| || || ||| ||| || ||| ||||| || || ||||| Sbjct 2623269 ATGAGCCGTGTGGTTTGGAAGAGTCTTTCATCGTCCCAGTCTGGGTGAACTTCCTTCAGC 2623210 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 ||||| || |||| ||||||||| | |||||| || || || ||||||||||| ||||| Sbjct 2623209 ACATCACAAACTCGGTTGTGTTCACGGAGCCATATGGTGGCATACATCATGAGGCCAGGG 2623150 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||||||||||||||| || || ||||| | || | | || || || | || || Sbjct 2623149 ACCAGGCCAAAAGCCTCGTGGCCAACAGCGAAGCGTTGAGTGTCTGGGACGTGAGGGGGG 2623090 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGT 9853 ||| ||| | || ||| ||||| ||| | |||||||||| || |||| Sbjct 2623089 TAGTGCATCTCGACACCGACGTCTTTAACCAATGGGGGATACACCTCTCCGT 2623038 >seq22 Length=4639432 Score = 127 bits (140), Expect = 3e-24 Identities = 178/250 (71%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 8691 ACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCC 8750 ||||||||| ||| |||| || || || || | ||| || | |||| ||| | Sbjct 4117064 ACGGACACCACTTGGTGTTGAGGCACACCAGTTTCTTCAGAGTGGCCGTTTTGATGATGC 4117005 Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 || ||| || || |||||||||||||| |||||||| | |||||| |||| || Sbjct 4117004 TGAAGCCCGTCTCCCCTCCGAAGGTGCTGGGCTTCCAGTACTCAGGGGAGTTGATGGGGT 4116945 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| |||||||| ||||| || ||||| |||| ||| | ||||||||||| || | Sbjct 4116944 TTCCCAGCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATGCTCTCACCAAAAA 4116885 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 | ||| ||||| | || |||| || || || | || ||||||| ||| || |||| Sbjct 4116884 TTAGGTTAGGACGAGTTTTCTCCAGCATGATGCCAGGATAAAACTCCAGAGCGTCAATGT 4116825 Query 8931 CTCCGTAAAG 8940 |||| || || Sbjct 4116824 CTCCATAGAG 4116815 Score = 113 bits (124), Expect = 6e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || ||||||||||||| |||||||| || || || || || ||| ||||| Sbjct 4113210 TCACCAATAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCATCGTCCCAGGTGGGATGC 4113151 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || ||||| | || || ||||||||||| ||||| |||||||| || |||||||| Sbjct 4113150 TCCGCCTTCAGGATGTCACAGACTCTGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATG 4113091 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9776 |||| || ||||| ||||| || ||| ||||||| |||||||| Sbjct 4113090 GTGAGGCCCGGCACGAGGCCGAACATCTCCTGACCGATGGCCAGACG 4113044 >seq10 Length=6656597 Score = 122 bits (134), Expect = 1e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 || ||||| |||| || || | || || ||||||||||| ||||||||| | || || Sbjct 2050306 TTCACGATGTCAAAGCCGACTTTGCCTCCAAAGGTGCTGGGCTTCCAGTAATCTGGCGAA 2050365 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| |||| |||||||||| |||||||| || || || |||| || | ||||| Sbjct 2050366 CAGATGGGGTTCCCCATGAGGCCCTTGAGGGAGAAGGGGGCGCCCATTTCCACCATGCTT 2050425 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || || | ||| || || | || |||| ||| ||||||| || || || | | Sbjct 2050426 TCTCCAAACACGGCCCCCGGCCGTGTTTTCTCCAGCAATAATCCGGGATAAAATTCAAGA 2050485 Query 8921 GCCTCGATGTCTCCGTAAAG 8940 || |||||||| ||||| || Sbjct 2050486 GCGTCGATGTCACCGTAGAG 2050505 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | |||||| || |||||||| ||||| || ||||| ||| |||||| Sbjct 2053487 TCACCGATGACGATGAGGCGGGTGGTCTGGAACAGCTGCTCGTCGTCCCAGGTGGGATGT 2053546 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| |||||| | || || || | |||||| ||||||||||| | || |||||||| Sbjct 2053547 TCTGCTTTCAGGATGTCACAGACCCGGTTGTGCTCCCTGAGCCACAGCGTGGCGTACATT 2053606 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 | |||||| | || || || |||| ||||||| |||| || | |||| Sbjct 2053607 CCCAAACCAGGAAGGAGTCCGAACACCTCCTGACCGATGGCCATCTGCTGCTGGACGGGG 2053666 Query 9790 ACTTCGGGAGGATAGATCAT 9809 || |||||||| ||| |||| Sbjct 2053667 ACCTCGGGAGGGTAGCTCAT 2053686 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||||||||| ||||| || || || || | |||||| || || |||| || | | Sbjct 2055056 TCACCTTTGACCCCCAGAGGTGTGGGGCAGTCCTCAGGAACAGGGGGCAGAAGCCGAGTG 2055115 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||| || ||| || | | |||||||| |||| | || | || ||||||| | Sbjct 2055116 TAGTAGCTCAGGTTGTAGTAGGACTCCCAGCTGAGGTAGCCATATTTCGAGTTGTAGGTT 2055175 Query 10407 GGAGGGCTGTCAATCAAATCGGATCT 10432 ||||||||| ||||| | |||||| Sbjct 2055176 GGAGGGCTGGGTATCAAGTTGGATCT 2055201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708497583791120