Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq23 123 2e-23 seq26 91.5 1e-13 >seq23 Length=4589928 Score = 123 bits (136), Expect = 2e-23 Identities = 170/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 94772 TTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTA 94831 |||||| || || |||| |||| |||| ||| | || ||||| || || | ||| Sbjct 3279589 TTTTACTGCCCCCCCCTCAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTG 3279530 Query 94832 TAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGA 94891 || ||| || ||| | ||| |||||||| || ||| ||||||| | || ||||| Sbjct 3279529 TAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGG 3279470 Query 94892 TCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCG 94951 || || || || ||||| ||||| | || || ||||| ||| ||| |||||| | Sbjct 3279469 TCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTG 3279410 Query 94952 TGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || |||| |||||||| || ||||| || || || |||||||||||||||| Sbjct 3279409 GGCTCCACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATGC 3279352 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || ||||| || || | |||||| || || ||| | ||| |||||||| || ||| Sbjct 3279322 GTGGATTCTTTCTGGATGTTATAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 3279263 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | || ||||| || || || || || || ||||| | || || ||||| Sbjct 3279262 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 3279203 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 ||| ||| |||||| | |||| | || |||| |||||||| || ||||| || || Sbjct 3279202 ACGTTCTCGATGGTGTCA-CTTGGTTCCACCTCAAGGGTGATGGTCTTCCCAGTGAGGGT 3279144 Query 94990 TTTCACAAAGATCTGCATGCTTACA 95014 ||| ||||||||||||||| ||||| Sbjct 3279143 TTTGACAAAGATCTGCATGTTTACA 3279119 Score = 98.7 bits (108), Expect = 9e-16 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 94772 TTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTA 94831 |||||| || || || | |||| |||| ||| | || || ||||| || | ||| Sbjct 3277397 TTTTACTGCCCGCCCCTGAGACGCAGGACCAGGTGAAGGGTTGACTCCTTCTGGATGTTG 3277338 Query 94832 TAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGA 94891 || || || ||| | ||| |||||||| || || ||||||| | || ||||| Sbjct 3277337 TAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGG 3277278 Query 94892 TCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCG 94951 || || || || || || ||||| | || || ||||| ||| ||| |||||| | Sbjct 3277277 TCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTG 3277218 Query 94952 TGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || || | |||||||| || ||||| || || || ||||||||||||||| Sbjct 3277217 GGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATG 3277161 >seq26 Length=4473900 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 94903 ACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTC 94962 |||||| ||||| | |||||| |||||||| ||| ||||||| | | || || || Sbjct 562084 ACCTTCCTTGTCTTGAATTTTCGCCTTGACATTTTCGATAGTGTCACTGGGCTCAACCTC 562025 Query 94963 AATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||||||||||||| || | |||||||||||||||||||| Sbjct 562024 AAGAGTGATGGTTTTTCCCGTTAATGTTTTCACAAAGATCTGCAT 561980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448273980014280