Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3022 163 4e-36 seq258 163 4e-36 seq70 163 4e-36 seq500 149 1e-31 seq672 136 6e-28 >seq3022 Length=5254 Score = 163 bits (180), Expect = 4e-36 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | || || ||||||||||| || |||||||||||||| || Sbjct 3092 CGCCAAGCGTCACCGCAAAGTCCTCCGTGATAACATCCAGGGCATCACCAAGCCAGCCAT 3033 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||| || || || ||||||||||| | || || | |||| || |||| Sbjct 3032 CCGCCGCTTGGCCCGCCGCGGCGGAGTCAAGCGCATTTCGGGTCTCATCTACGAGGAGAC 2973 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 2972 CCGCGGTGTGTTGAAGGTCTTCCTGGAGAACGTCATCCGGGACGCCGTCACCTACACCGA 2913 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||| |||||||| | ||||| || | || | || || Sbjct 2912 GCACGCCAAGAGGAAGACTGTCACCGCCATGGATGTGGTCTACGCCCTCAAGAGACAGGG 2853 Query 16672 CCG 16674 ||| Sbjct 2852 CCG 2850 >seq258 Length=520730 Score = 163 bits (180), Expect = 4e-36 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | || || ||||||||||| || |||||||||||||| || Sbjct 12118 CGCCAAGCGTCACCGCAAAGTCCTCCGTGATAACATCCAGGGCATCACCAAGCCAGCCAT 12059 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||| || || || ||||||||||| | || || | |||| || |||| Sbjct 12058 CCGCCGCTTGGCCCGCCGCGGCGGAGTCAAGCGCATTTCGGGTCTCATCTACGAGGAGAC 11999 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 11998 CCGCGGTGTGTTGAAGGTCTTCCTGGAGAACGTCATCCGGGACGCCGTCACCTACACCGA 11939 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||| |||||||| | ||||| || | || | || || Sbjct 11938 GCACGCCAAGAGGAAGACTGTCACCGCCATGGATGTGGTCTACGCCCTCAAGAGACAGGG 11879 Query 16672 CCG 16674 ||| Sbjct 11878 CCG 11876 >seq70 Length=2359738 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | ||| || ||||||||||| |||||||| ||||| ||||| Sbjct 1472728 CGCCAAGCGGCACCGTAAGGTTCTCCGTGATAACATCCAGGGAATCACTAAGCCCGCTAT 1472669 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||||||||| || || ||||| |||||| |||| || || |||| || |||| Sbjct 1472668 TCGCCGTCTGGCTCGCCGCGGCGGAGTAAAGCGTATCTCAGGCCTGATCTACGAGGAGAC 1472609 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| ||||| | ||| ||| |||| ||| || || || ||||| Sbjct 1472608 CCGTGGTGTGCTGAAGGTCTTCTTGGAGAACGTGATCCGTGACGCCGTCACTTACACCGA 1472549 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| ||||||| | || || || |||| | || || Sbjct 1472548 GCACGCCAAGAGGAAGACTGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGGCAGGG 1472489 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 1472488 CCGCACCCTGTACGGGTTCGGAGGTTAA 1472461 >seq500 Length=188146 Score = 149 bits (164), Expect = 1e-31 Identities = 196/269 (73%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || || || ||||||||||| |||||||| ||||| || | Sbjct 155003 CGCCAAGCGGCACCGGAAGGTC-CTCCGTGATAACATCCAGGGAATCACTAAGCCCGCCA 155061 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || |||||||||||| |||| || ||| |||| || |||| Sbjct 155062 TCCGCCGCCTGGCCCGCCGCGGCGGAGTCAAGCGTATCTCCGGCTTGATCTACGAGGAGA 155121 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | ||||| ||| || |||| || ||| || ||| |||| Sbjct 155122 CCCGCGGTGTGCTCAAGGTTTTCCTGGAGAATGTCATCCGGGACGCTGTCACCTACACCG 155181 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| ||||||| | || || || |||| | || | Sbjct 155182 AGCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCCCTGAAGAGGCAGG 155241 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || || || ||| ||||| Sbjct 155242 GCAGAACCCTCTACGGGTTCGGAGGTTAA 155270 Score = 149 bits (164), Expect = 1e-31 Identities = 196/269 (73%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || || || ||||||||||| |||||||| ||||| || | Sbjct 161254 CGCCAAGCGGCACCGGAAGGTC-CTCCGTGATAACATCCAGGGAATCACTAAGCCCGCCA 161312 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || |||||||||||| |||| || ||| |||| || |||| Sbjct 161313 TCCGCCGCCTGGCCCGCCGCGGCGGAGTCAAGCGTATCTCCGGCTTGATCTACGAGGAGA 161372 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | ||||| ||| || |||| || ||| || ||| |||| Sbjct 161373 CCCGCGGTGTGCTCAAGGTTTTCCTGGAGAATGTCATCCGGGACGCTGTCACCTACACCG 161432 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| ||||||| | || || || |||| | || | Sbjct 161433 AGCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCCCTGAAGAGGCAGG 161492 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || || || ||| ||||| Sbjct 161493 GCAGAACCCTCTACGGGTTCGGAGGTTAA 161521 Score = 149 bits (164), Expect = 1e-31 Identities = 196/269 (73%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || || || ||||||||||| |||||||| ||||| || | Sbjct 165838 CGCCAAGCGGCACCGGAAGGTC-CTCCGTGATAACATCCAGGGAATCACTAAGCCCGCCA 165896 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || |||||||||||| |||| || ||| |||| || |||| Sbjct 165897 TCCGCCGCCTGGCCCGCCGCGGCGGAGTCAAGCGTATCTCCGGCTTGATCTACGAGGAGA 165956 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | ||||| ||| || |||| || ||| || ||| |||| Sbjct 165957 CCCGCGGTGTGCTCAAGGTTTTCCTGGAGAATGTCATCCGGGACGCTGTCACCTACACCG 166016 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| ||||||| | || || || |||| | || | Sbjct 166017 AGCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCCCTGAAGAGGCAGG 166076 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || || || ||| ||||| Sbjct 166077 GCAGAACCCTCTACGGGTTCGGAGGTTAA 166105 >seq672 Length=104558 Score = 136 bits (150), Expect = 6e-28 Identities = 191/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | || || || |||||||| |||||||| ||||| ||||| Sbjct 16123 CGCCAAGCGTCACCGGAAGGTACTCCGGGACAACATCCAGGGAATCACTAAGCCCGCTAT 16064 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || || || ||||| |||||| |||| || || |||| || |||| Sbjct 16063 CCGCCGTCTGGCCCGCCGCGGCGGAGTGAAGCGTATCTCCGGCCTGATCTACGAGGAGAC 16004 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||| ||||||| ||| || |||| || || | ||| ||||| Sbjct 16003 CCGCGGCGTGCTGAAAGTCTTCCTGGAGAATGTCATCCGGGACGCCGTTACCTACACCGA 15944 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || |||| | || || Sbjct 15943 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCCCTGAAGAGGCAGGG 15884 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | | || || || ||| ||||| Sbjct 15883 CAGAACCCTCTACGGGTTCGGAGGTTAA 15856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072390334589